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1R6X
Asym. Unit
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Asym.Unit (77 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF A TRUNCATED FORM OF YEAST ATP SULFURYLASE, LACKING THE C-TERMINAL APS KINASE-LIKE DOMAIN, IN COMPLEX WITH SULFATE
Authors
:
D. J. Lalor, T. Schnyder, V. Saridakis, D. E. Pilloff, A. Dong, H. Tang, T. S. Leyh, E. F. Pai
Date
:
17 Oct 03 (Deposition) - 11 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Aps Kinase-Like Domain, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Lalor, T. Schnyder, V. Saridakis, D. E. Pilloff, A. Dong, H. Tang, T. S. Leyh, E. F. Pai
Structural And Functional Analysis Of A Truncated Form Of Saccharomyces Cerevisiae Atp Sulfurylase: C-Terminal Domain Essential For Oligomer Formation But Not For Activity
Protein Eng. V. 16 1071 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
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No.
Name
Count
Type
Full Name
1
CO
1
Ligand/Ion
COBALT (II) ION
2
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:195 , ARG A:197 , ALA A:293 , HOH A:4071 , HOH A:4111 , HOH A:4205 , HOH A:4393
BINDING SITE FOR RESIDUE SO4 A 2002
2
AC2
SOFTWARE
HIS A:166 , TYR A:167 , ASP A:168 , ARG A:173 , HOH A:4184 , HOH A:4265 , HOH A:4407
BINDING SITE FOR RESIDUE SO4 A 2004
3
AC3
SOFTWARE
ARG A:205 , ARG A:213 , HOH A:4364
BINDING SITE FOR RESIDUE SO4 A 2005
4
AC4
SOFTWARE
ASP A:168 , HIS A:235 , HIS A:236 , HOH A:4265 , HOH A:4355
BINDING SITE FOR RESIDUE CO A 3000
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:2-387)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YJR010W
1
YJR010W.1
X:456231-457766
1536
MET3_YEAST
1-511
511
1
A:2-387
386
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1r6xa1 (A:2-168)
2a: SCOP_d1r6xa2 (A:169-387)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
ATP sulfurylase N-terminal domain
(15)
Protein domain
:
ATP sulfurylase N-terminal domain
(15)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(8)
1a
d1r6xa1
A:2-168
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
ATP sulfurylase catalytic domain
(16)
Protein domain
:
ATP sulfurylase catalytic domain
(15)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(8)
2a
d1r6xa2
A:169-387
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1r6xA02 (A:175-387)
2a: CATH_1r6xA01 (A:2-162)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Baker's yeast (Saccharomyces cerevisiae)
(11)
1a
1r6xA02
A:175-387
Architecture
:
Roll
(3276)
Topology
:
Sulfate adenylyltransferase
(12)
Homologous Superfamily
:
Sulfate adenylyltransferase
(12)
Baker's yeast (Saccharomyces cerevisiae)
(8)
2a
1r6xA01
A:2-162
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_ATP_sulfurylase_1r6xA01 (A:169-387)
2a: PFAM_PUA_2_1r6xA02 (A:2-163)
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Clan
:
HUP
(230)
Family
:
ATP-sulfurylase
(9)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
1a
ATP-sulfurylase-1r6xA01
A:169-387
Clan
:
PUA
(42)
Family
:
PUA_2
(11)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
2a
PUA_2-1r6xA02
A:2-163
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Asymmetric Unit 1
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