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1R6O
Biol. Unit 3
Info
Asym.Unit (92 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (44 KB)
Biol.Unit 3 (85 KB)
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(1)
Title
:
ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA/ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS
Authors
:
D. Xia, M. R. Maurizi, F. Guo, S. K. Singh, L. Esser
Date
:
15 Oct 03 (Deposition) - 15 Feb 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Clpa, Aaa+, N-Terminal Domain, Clps, Crystal, Binding Mechanism, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Xia, L. Esser, S. K. Singh, F. Guo, M. R. Maurizi
Crystallographic Investigation Of Peptide Binding Sites In The N-Domain Of The Clpa Chaperone
J. Struct. Biol. V. 146 166 2004
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: YTTRIUM ION (Y1a)
3b: YTTRIUM ION (Y1b)
4a: BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYD... (YBTa)
4b: BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYD... (YBTb)
4c: BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYD... (YBTc)
4d: BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYD... (YBTd)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
3
Ligand/Ion
GLYCEROL
3
Y1
-1
Ligand/Ion
YTTRIUM ION
4
YBT
4
Ligand/Ion
BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANEYTTRIUM
5
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:3 , LEU B:6 , ASN B:37 , THR B:104 , GLY B:105 , HOH B:422
BINDING SITE FOR RESIDUE CL B 144
02
AC2
SOFTWARE
HIS A:20 , HIS A:22 , GLU A:63 , HOH A:416
BINDING SITE FOR RESIDUE ZN A 411
03
AC3
SOFTWARE
HIS B:20 , HIS B:22 , GLU B:63 , HOH B:417
BINDING SITE FOR RESIDUE ZN B 412
04
AC4
SOFTWARE
HIS D:66 , HOH D:462
BINDING SITE FOR RESIDUE Y1 D 413
05
AC5
SOFTWARE
ASP D:9 , ASP D:11
BINDING SITE FOR RESIDUE Y1 D 414
06
AC6
SOFTWARE
ASN B:3 , GLN B:4 , GLU B:5 , GLU B:102 , HOH B:445 , HOH B:455 , GLU C:41
BINDING SITE FOR RESIDUE YBT B 413
07
AC7
SOFTWARE
ARG A:41 , GLU A:42 , GLU A:45 , HOH A:417
BINDING SITE FOR RESIDUE YBT A 412
08
AC8
SOFTWARE
ARG B:41 , GLU B:42 , GLU B:45 , HOH B:419 , HOH B:438 , HOH B:464 , HOH B:481
BINDING SITE FOR RESIDUE YBT B 414
09
AC9
SOFTWARE
MET A:1 , GLU A:7 , HOH A:445 , HOH A:459 , ASP C:11 , HOH C:128 , GLU D:56
BINDING SITE FOR RESIDUE YBT A 413
10
BC1
SOFTWARE
GLU A:117 , HOH C:112
BINDING SITE FOR RESIDUE GOL A 414
11
BC2
SOFTWARE
GLU B:117 , HOH B:429 , HOH B:439 , ALA D:78
BINDING SITE FOR RESIDUE GOL B 415
12
BC3
SOFTWARE
GLU B:128 , ASP B:133
BINDING SITE FOR RESIDUE GOL B 416
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1r6oa_ (A:)
1b: SCOP_d1r6ob_ (B:)
2a: SCOP_d1r6oc_ (C:)
2b: SCOP_d1r6od_ (D:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Double Clp-N motif
(13)
Superfamily
:
Double Clp-N motif
(13)
Family
:
Double Clp-N motif
(13)
Protein domain
:
automated matches
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d1r6oa_
A:
1b
d1r6ob_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ClpS-like
(30)
Superfamily
:
ClpS-like
(30)
Family
:
Adaptor protein ClpS (YljA)
(17)
Protein domain
:
automated matches
(9)
Escherichia coli [TaxId: 562]
(2)
2a
d1r6oc_
C:
2b
d1r6od_
D:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1r6oC00 (C:7-106)
1b: CATH_1r6oD00 (D:5-106)
2a: CATH_1r6oB00 (B:1-141)
2b: CATH_1r6oA00 (A:1-142)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein L30; Chain: A,
(164)
Homologous Superfamily
:
[code=3.30.1390.10, no name defined]
(20)
Escherichia coli. Organism_taxid: 562.
(1)
1a
1r6oC00
C:7-106
1b
1r6oD00
D:5-106
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Double Clp-N motif
(16)
Homologous Superfamily
:
Double Clp-N motif
(16)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1r6oB00
B:1-141
2b
1r6oA00
A:1-142
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_ClpS_1r6oD01 (D:22-103)
1b: PFAM_ClpS_1r6oD02 (D:22-103)
2a: PFAM_Clp_N_1r6oB01 (B:13-63)
2b: PFAM_Clp_N_1r6oB02 (B:13-63)
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Clans
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)
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)
(
)
Clan
:
no clan defined [family: ClpS]
(10)
Family
:
ClpS
(10)
Escherichia coli (strain K12)
(10)
1a
ClpS-1r6oD01
D:22-103
1b
ClpS-1r6oD02
D:22-103
Clan
:
no clan defined [family: Clp_N]
(16)
Family
:
Clp_N
(16)
Escherichia coli (strain K12)
(11)
2a
Clp_N-1r6oB01
B:13-63
2b
Clp_N-1r6oB02
B:13-63
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Asymmetric Unit 1
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Asym.Unit (92 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
Biol.Unit 2 (44 KB)
Header - Biol.Unit 2
Biol.Unit 3 (85 KB)
Header - Biol.Unit 3
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