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1R5V
Biol. Unit 2
Info
Asym.Unit (132 KB)
Biol.Unit 1 (128 KB)
Biol.Unit 2 (66 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
EVIDENCE THAT STRUCTURAL REARRANGEMENTS AND/OR FLEXIBILITY DURING TCR BINDING CAN CONTRIBUTE TO T-CELL ACTIVATION
Authors
:
M. Krogsgaard, N. Prado, E. J. Adams, X. L. He, D. C. Chow, D. B. Wilson, K. M. M. Davis
Date
:
13 Oct 03 (Deposition) - 03 Feb 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,B,E (1x)
Biol. Unit 3: C,D,F (1x)
Keywords
:
Tcr, Mhc Class Ii, Structural Rearangement, Signaling Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Krogsgaard, N. Prado, E. J. Adams, X. L. He, D. C. Chow, D. B. Wilson, K. C. Garcia, M. M. Davis
Evidence That Structural Rearrangements And/Or Flexibility During Tcr Binding Can Contribute To T Cell Activation.
Mol. Cell V. 12 1367 2003
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Hetero Components
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Sites
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PROSITE Patterns/Profiles
(1, 2)
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1: IG_MHC (B:198-204)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
HA22_MOUSE
186-192
1
A:161-167
-
HB2I_MOUSE
198-204
1
B:198-204
-
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1r5va1 (A:82-182)
1b: SCOP_d1r5vc1 (C:82-182)
2a: SCOP_d1r5vb1 (B:121-215)
2b: SCOP_d1r5vd1 (D:121-215)
3a: SCOP_d1r5va2 (A:3-81)
3b: SCOP_d1r5vc2 (C:3-81)
4a: SCOP_d1r5vb2 (B:31-120)
4b: SCOP_d1r5vd2 (D:31-120)
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)
Protein Domains
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)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Class II MHC alpha chain, C-terminal domain
(75)
Mouse (Mus musculus), I-E group [TaxId: 10090]
(9)
1a
d1r5va1
A:82-182
1b
d1r5vc1
C:82-182
Protein domain
:
Class II MHC beta chain, C-terminal domain
(70)
Mouse (Mus musculus), I-E group [TaxId: 10090]
(9)
2a
d1r5vb1
B:121-215
2b
d1r5vd1
D:121-215
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class II MHC alpha chain, N-terminal domain
(75)
Mouse (Mus musculus), I-EK [TaxId: 10090]
(9)
3a
d1r5va2
A:3-81
3b
d1r5vc2
C:3-81
Protein domain
:
Class II MHC beta chain, N-terminal domain
(70)
Mouse (Mus musculus), I-EK [TaxId: 10090]
(9)
4a
d1r5vb2
B:31-120
4b
d1r5vd2
D:31-120
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1r5vB01 (B:31-119)
1b: CATH_1r5vD01 (D:31-119)
1c: CATH_1r5vA01 (A:3-81)
1d: CATH_1r5vC01 (C:3-81)
2a: CATH_1r5vA02 (A:82-181)
2b: CATH_1r5vC02 (C:82-181)
2c: CATH_1r5vB02 (B:120-215)
2d: CATH_1r5vD02 (D:120-215)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
Homologous Superfamily
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
House mouse (Mus musculus)
(25)
1a
1r5vB01
B:31-119
1b
1r5vD01
D:31-119
1c
1r5vA01
A:3-81
1d
1r5vC01
C:3-81
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1r5vA02
A:82-181
2b
1r5vC02
C:82-181
2c
1r5vB02
B:120-215
2d
1r5vD02
D:120-215
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (132 KB)
Header - Asym.Unit
Biol.Unit 1 (128 KB)
Header - Biol.Unit 1
Biol.Unit 2 (66 KB)
Header - Biol.Unit 2
Biol.Unit 3 (66 KB)
Header - Biol.Unit 3
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