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1R5N
Asym. Unit
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Asym.Unit (74 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF SUP35 COMPLEXED WITH GDP
Authors
:
C. Kong, H. Song
Date
:
10 Oct 03 (Deposition) - 25 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Translation Termination, Peptide Release, Gtpase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Kong, K. Ito, M. A. Walsh, M. Wada, Y. Liu, S. Kumar, D. Barford, Y. Nakamura, H. Song
Crystal Structure And Functional Analysis Of The Eukaryotic Class Ii Release Factor Erf3 From S. Pombe
Mol. Cell V. 14 233 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
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No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:246 , VAL A:247 , ASP A:248 , ALA A:249 , GLY A:250 , LYS A:251 , SER A:252 , THR A:253 , LYS A:278 , ASN A:384 , LYS A:385 , ASP A:387 , GLU A:388 , SER A:427 , ALA A:428 , TYR A:429
BINDING SITE FOR RESIDUE GDP A 663
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1r5na2 (A:555-622)
2a: SCOP_d1r5na1 (A:460-554)
3a: SCOP_d1r5na3 (A:215-459)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Eukaryotic peptide chain release factor ERF2, C-terminal domain
(3)
Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
(3)
1a
d1r5na2
A:555-622
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Eukaryotic peptide chain release factor ERF2, post-G domain
(3)
Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
(3)
2a
d1r5na1
A:460-554
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Eukaryotic peptide chain release factor ERF2, G domain
(3)
Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
(3)
3a
d1r5na3
A:215-459
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1r5nA01 (A:215-463)
2a: CATH_1r5nA03 (A:553-662)
2b: CATH_1r5nA02 (A:464-552)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Fission yeast (Schizosaccharomyces pombe)
(5)
1a
1r5nA01
A:215-463
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Fission yeast (Schizosaccharomyces pombe)
(4)
2a
1r5nA03
A:553-662
2b
1r5nA02
A:464-552
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_GTP_EFTU_1r5nA01 (A:236-484)
2a: PFAM_GTP_EFTU_D2_1r5nA02 (A:481-548)
3a: PFAM_GTP_EFTU_D3_1r5nA03 (A:553-661)
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Clan
:
P-loop_NTPase
(1112)
Family
:
GTP_EFTU
(39)
Schizosaccharomyces pombe (strain ATCC 38366 / 972) (Fission yeast)
(4)
1a
GTP_EFTU-1r5nA01
A:236-484
Clan
:
no clan defined [family: GTP_EFTU_D2]
(39)
Family
:
GTP_EFTU_D2
(39)
Schizosaccharomyces pombe (strain ATCC 38366 / 972) (Fission yeast)
(4)
2a
GTP_EFTU_D2-1r5nA02
A:481-548
Clan
:
no clan defined [family: GTP_EFTU_D3]
(11)
Family
:
GTP_EFTU_D3
(11)
Schizosaccharomyces pombe (strain ATCC 38366 / 972) (Fission yeast)
(4)
3a
GTP_EFTU_D3-1r5nA03
A:553-661
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Asymmetric Unit 1
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