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1R5M
Asym. Unit
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Asym.Unit (67 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL WD40 DOMAIN OF SIF2
Authors
:
D. Cerna, D. K. Wilson
Date
:
10 Oct 03 (Deposition) - 01 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transcription Corepressor, Wd40 Repeat, Beta Propeller
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. Cerna, D. K. Wilson
The Structure Of Sif2P, A Wd Repeat Protein Functioning In The Set3 Corepressor Complex.
J. Mol. Biol. V. 351 923 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
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1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
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No.
Name
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1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:179 , ARG A:183 , ARG A:207 , HOH A:2183
BINDING SITE FOR RESIDUE SO4 A 1001
2
AC2
SOFTWARE
THR A:164 , SER A:513 , HOH A:2014 , HOH A:2052 , HOH A:2065 , HOH A:2231 , HOH A:2250
BINDING SITE FOR RESIDUE SO4 A 1002
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Exons
(1, 1)
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Exon 1.1 (A:146-535 (gaps))
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1: Boundary -/1.1
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ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YBR103W
1
YBR103W.1
II:447703-449310
1608
SIF2_YEAST
1-535
535
1
A:146-535 (gaps)
390
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SCOP Domains
(0, 0)
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1r5mA00 (A:146-537)
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Baker's yeast (Saccharomyces cerevisiae)
(12)
1a
1r5mA00
A:146-537
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_WD40_1r5mA01 (A:391-428)
1b: PFAM_WD40_1r5mA02 (A:391-428)
1c: PFAM_WD40_1r5mA03 (A:391-428)
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Clan
:
Beta_propeller
(192)
Family
:
WD40
(64)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(18)
1a
WD40-1r5mA01
A:391-428
1b
WD40-1r5mA02
A:391-428
1c
WD40-1r5mA03
A:391-428
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