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1R5L
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ALPHA-TOCOPHEROL TRANSFER PROTEIN BOUND TO ITS LIGAND
Authors
:
K. C. Min, R. A. Kovall, W. A. Hendrickson
Date
:
10 Oct 03 (Deposition) - 25 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Attp, Tocopherol, Ataxia With Vitamin E Deficiency, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. C. Min, R. A. Kovall, W. A. Hendrickson
Crystal Structure Of Human Alpha-Tocopherol Transfer Protein Bound To Its Ligand: Implications For Ataxia With Vitamin E Deficiency
Proc. Natl. Acad. Sci. Usa V. 100 14713 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
2a: (2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R... (VIVa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
2
VIV
1
Ligand/Ion
(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:136 , SER A:140 , ILE A:154 , PHE A:158 , VAL A:182 , LEU A:183 , PHE A:187 , VAL A:191 , ILE A:210 , HOH A:302 , HOH A:402
BINDING SITE FOR RESIDUE VIV A 301
[
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SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022388 (R59W, chain A, )
2: VAR_005668 (H101Q, chain A, )
3: VAR_022389 (A120T, chain A, )
4: VAR_022390 (E141K, chain A, )
5: VAR_037973 (T172S, chain A, )
6: VAR_007858 (R192H, chain A, )
7: VAR_022391 (R221W, chain A, )
8: VAR_022392 (G246R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022388
R
59
W
TTPA_HUMAN
Disease (AVED)
---
A
R
59
W
2
UniProt
VAR_005668
H
101
Q
TTPA_HUMAN
Disease (AVED)
---
A
H
101
Q
3
UniProt
VAR_022389
A
120
T
TTPA_HUMAN
Disease (AVED)
---
A
A
120
T
4
UniProt
VAR_022390
E
141
K
TTPA_HUMAN
Disease (AVED)
---
A
E
141
K
5
UniProt
VAR_037973
T
172
S
TTPA_HUMAN
Polymorphism
34647756
A
T
172
S
6
UniProt
VAR_007858
R
192
H
TTPA_HUMAN
Disease (AVED)
28936369
A
R
192
H
7
UniProt
VAR_022391
R
221
W
TTPA_HUMAN
Disease (AVED)
35916840
A
R
221
W
8
UniProt
VAR_022392
G
246
R
TTPA_HUMAN
Disease (AVED)
---
A
G
246
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CRAL_TRIO (A:88-253)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CRAL_TRIO
PS50191
CRAL-TRIO lipid binding domain profile.
TTPA_HUMAN
88-253
1
A:88-253
[
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Exons
(5, 5)
Info
All Exons
Exon 1.1a (A:25-68)
Exon 1.2 (A:69-120)
Exon 1.3 (A:120-184)
Exon 1.4 (A:185-221)
Exon 1.5 (A:222-275)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000260116
1a
ENSE00002100795
chr8:
63998612-63998377
236
TTPA_HUMAN
1-68
68
1
A:25-68
44
1.2
ENST00000260116
2
ENSE00001201488
chr8:
63985647-63985494
154
TTPA_HUMAN
69-120
52
1
A:69-120
52
1.3
ENST00000260116
3
ENSE00001201483
chr8:
63978656-63978463
194
TTPA_HUMAN
120-184
65
1
A:120-184
65
1.4
ENST00000260116
4
ENSE00000819496
chr8:
63976875-63976765
111
TTPA_HUMAN
185-221
37
1
A:185-221
37
1.5
ENST00000260116
5
ENSE00001201491
chr8:
63973984-63972342
1643
TTPA_HUMAN
222-278
57
1
A:222-275
54
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1r5la1 (A:25-90)
2a: SCOP_d1r5la2 (A:91-275)
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Classes
(
)
(
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Folds
(
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(
)
Superfamilies
(
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
RuvA C-terminal domain-like
(106)
Superfamily
:
CRAL/TRIO N-terminal domain
(13)
Family
:
CRAL/TRIO N-terminal domain
(6)
Protein domain
:
Alpha-tocopherol transfer protein
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1r5la1
A:25-90
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SpoIIaa-like
(27)
Superfamily
:
CRAL/TRIO domain
(13)
Family
:
CRAL/TRIO domain
(8)
Protein domain
:
Alpha-tocopherol transfer protein
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1r5la2
A:91-275
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_CRAL_TRIO_1r5lA01 (A:95-248)
2a: PFAM_CRAL_TRIO_N_1r5lA02 (A:25-73)
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(
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)
(
)
Clan
:
CRAL_TRIO
(6)
Family
:
CRAL_TRIO
(3)
Homo sapiens (Human)
(2)
1a
CRAL_TRIO-1r5lA01
A:95-248
Clan
:
no clan defined [family: CRAL_TRIO_N]
(3)
Family
:
CRAL_TRIO_N
(3)
Homo sapiens (Human)
(2)
2a
CRAL_TRIO_N-1r5lA02
A:25-73
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Chain A
Asymmetric Unit 1
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