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1R55
Asym. Unit
Info
Asym.Unit (44 KB)
Biol.Unit 1 (39 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN ADAM 33
Authors
:
P. Orth, P. Reichert, W. Wang, W. W. Prosise, T. Yarosh-Tomaine, G. Hamm L. Xiao, U. A. Mirza, J. Zou, C. Strickland, S. S. Taremi, H. V. Le, V. Mad
Date
:
09 Oct 03 (Deposition) - 12 Oct 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.58
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Metalloprotease, Inhibitor, Asthma, Adam, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Orth, P. Reichert, W. Wang, W. W. Prosise, T. Yarosh-Tomaine, G. Hammond, L. Xiao, U. A. Mirza, J. Zou, C. Strickland, S. S. Taremi, H. V. Le, V. Madison
Crystal Structre Of The Catalytic Domain Of Human Adam33
J. Mol. Biol. V. 335 129 2004
[
close entry info
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Hetero Components
(6, 10)
Info
All Hetero Components
1a: (2S,3R)-N~4~-[(1S)-2,2-DIMETHYL-1-... (097a)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
097
1
Ligand/Ion
(2S,3R)-N~4~-[(1S)-2,2-DIMETHYL-1-(METHYLCARBAMOYL)PROPYL]-N~1~,2-DIHYDROXY-3-(2-METHYLPROPYL)BUTANEDIAMIDE
2
CA
1
Ligand/Ion
CALCIUM ION
3
CL
2
Ligand/Ion
CHLORIDE ION
4
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:276 , TRP A:280 , NAG A:511 , HOH A:667
BINDING SITE FOR RESIDUE NAG A 510
02
AC2
SOFTWARE
ARG A:293 , NAG A:510 , MAN A:512 , MAN A:514 , HOH A:667
BINDING SITE FOR RESIDUE NAG A 511
03
AC3
SOFTWARE
TYR A:215 , GLU A:261 , GLN A:292 , ARG A:293 , NAG A:511 , MAN A:513 , MAN A:514 , HOH A:680
BINDING SITE FOR RESIDUE MAN A 512
04
AC4
SOFTWARE
TRP A:285 , GLY A:288 , MAN A:512 , HOH A:604 , HOH A:618
BINDING SITE FOR RESIDUE MAN A 513
05
AC5
SOFTWARE
LEU A:260 , ARG A:293 , NAG A:511 , MAN A:512 , HOH A:660 , HOH A:678
BINDING SITE FOR RESIDUE MAN A 514
06
AC6
SOFTWARE
HIS A:345 , HIS A:349 , HIS A:355 , 097 A:518 , HOH A:540
BINDING SITE FOR RESIDUE ZN A 201
07
AC7
SOFTWARE
GLU A:213 , ASP A:296 , CYS A:404 , ASN A:407 , HOH A:521 , HOH A:527
BINDING SITE FOR RESIDUE CA A 515
08
AC8
SOFTWARE
SER A:333 , ARG A:398
BINDING SITE FOR RESIDUE CL A 516
09
AC9
SOFTWARE
ARG A:226 , ARG A:236 , ARG A:398 , HOH A:535
BINDING SITE FOR RESIDUE CL A 517
10
BC1
SOFTWARE
ZN A:201 , ALA A:309 , THR A:310 , VAL A:311 , GLY A:312 , THR A:342 , HIS A:345 , GLU A:346 , HIS A:349 , HIS A:355 , ALA A:374 , ALA A:375 , ALA A:376 , THR A:377 , HOH A:540 , HOH A:558 , HOH A:620 , HOH A:621
BINDING SITE FOR RESIDUE 097 A 518
[
close Site info
]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_030513 (T272M, chain A, )
2: VAR_066337 (A305V, chain A, )
3: VAR_030514 (V316I, chain A, )
4: VAR_030515 (P336S, chain A, )
5: VAR_030516 (A365S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030513
T
272
M
ADA33_HUMAN
Polymorphism
41534847
A
T
272
M
2
UniProt
VAR_066337
A
305
V
ADA33_HUMAN
Unclassified
---
A
A
305
V
3
UniProt
VAR_030514
V
316
I
ADA33_HUMAN
Polymorphism
41459049
A
V
316
I
4
UniProt
VAR_030515
P
336
S
ADA33_HUMAN
Polymorphism
41483049
A
P
336
S
5
UniProt
VAR_030516
A
365
S
ADA33_HUMAN
Polymorphism
41419248
A
A
365
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (A:210-409)
2: ZINC_PROTEASE (A:342-351)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ADA33_HUMAN
210-409
1
A:210-409
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ADA33_HUMAN
342-351
1
A:342-351
[
close PROSITE info
]
Exons
(6, 6)
Info
All Exons
Exon 1.7 (A:208-222)
Exon 1.8 (A:223-246)
Exon 1.9b (A:247-302)
Exon 1.9e (A:302-330)
Exon 1.10a (A:331-378)
Exon 1.10e (A:378-410)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9b
4: Boundary 1.9b/1.9e
5: Boundary 1.9e/1.10a
6: Boundary 1.10a/1.10e
7: Boundary 1.10e/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000356518
1a
ENSE00001943353
chr20:
3662893-3662555
339
ADA33_HUMAN
1-33
33
0
-
-
1.2
ENST00000356518
2
ENSE00001162726
chr20:
3660218-3660139
80
ADA33_HUMAN
33-59
27
0
-
-
1.3
ENST00000356518
3
ENSE00001162723
chr20:
3657790-3657714
77
ADA33_HUMAN
60-85
26
0
-
-
1.4a
ENST00000356518
4a
ENSE00001386761
chr20:
3655752-3655674
79
ADA33_HUMAN
85-111
27
0
-
-
1.5
ENST00000356518
5
ENSE00000990640
chr20:
3655496-3655420
77
ADA33_HUMAN
112-137
26
0
-
-
1.6
ENST00000356518
6
ENSE00000990641
chr20:
3655340-3655151
190
ADA33_HUMAN
137-200
64
0
-
-
1.7
ENST00000356518
7
ENSE00001655537
chr20:
3654931-3654866
66
ADA33_HUMAN
201-222
22
1
A:208-222
15
1.8
ENST00000356518
8
ENSE00001787461
chr20:
3654782-3654711
72
ADA33_HUMAN
223-246
24
1
A:223-246
24
1.9b
ENST00000356518
9b
ENSE00001766750
chr20:
3654558-3654392
167
ADA33_HUMAN
247-302
56
1
A:247-302
56
1.9e
ENST00000356518
9e
ENSE00001709035
chr20:
3654305-3654221
85
ADA33_HUMAN
302-330
29
1
A:302-330
29
1.10a
ENST00000356518
10a
ENSE00001614585
chr20:
3654143-3654001
143
ADA33_HUMAN
331-378
48
1
A:331-378
48
1.10e
ENST00000356518
10e
ENSE00001598605
chr20:
3653545-3653368
178
ADA33_HUMAN
378-437
60
1
A:378-410
33
1.11
ENST00000356518
11
ENSE00002159586
chr20:
3653273-3653184
90
ADA33_HUMAN
438-467
30
0
-
-
1.12
ENST00000356518
12
ENSE00001601961
chr20:
3652976-3652781
196
ADA33_HUMAN
468-533
66
0
-
-
1.13a
ENST00000356518
13a
ENSE00001640837
chr20:
3652632-3652524
109
ADA33_HUMAN
533-569
37
0
-
-
1.14
ENST00000356518
14
ENSE00002191279
chr20:
3652426-3652228
199
ADA33_HUMAN
569-635
67
0
-
-
1.15
ENST00000356518
15
ENSE00001786400
chr20:
3652143-3652066
78
ADA33_HUMAN
636-661
26
0
-
-
1.16
ENST00000356518
16
ENSE00001622157
chr20:
3651992-3651884
109
ADA33_HUMAN
662-698
37
0
-
-
1.17a
ENST00000356518
17a
ENSE00001664552
chr20:
3651800-3651653
148
ADA33_HUMAN
698-747
50
0
-
-
1.18c
ENST00000356518
18c
ENSE00001698260
chr20:
3650284-3650193
92
ADA33_HUMAN
747-778
32
0
-
-
1.18d
ENST00000356518
18d
ENSE00001641345
chr20:
3650017-3649946
72
ADA33_HUMAN
778-802
25
0
-
-
1.19b
ENST00000356518
19b
ENSE00001936716
chr20:
3649647-3648617
1031
ADA33_HUMAN
802-813
12
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1r55a_ (A:)
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Classes
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Folds
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Reprolysin-like
(24)
Protein domain
:
ADAM33
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1r55a_
A:
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1r55A00 (A:208-410)
View:
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Classes
(
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(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1r55A00
A:208-410
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Reprolysin_1r55A01 (A:210-409)
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Clans
(
)
(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Reprolysin
(9)
Homo sapiens (Human)
(9)
1a
Reprolysin-1r55A01
A:210-409
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