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1R4X
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYS OF THE GAMMA-COPI APPENDAGE DOMAIN
Authors
:
P. J. Watson, G. Frigerio, B. M. Collins, R. Duden, D. J. Owen
Date
:
09 Oct 03 (Deposition) - 28 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Appendage; Beta Sandwich; Coatomer; Adp-Ribosylation Factors, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Watson, G. Frigerio, B. M. Collins, R. Duden, D. J. Owen
Gamma-Cop Appendage Domain - Structure And Function
Traffic V. 5 79 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: S-(DIMETHYLARSENIC)CYSTEINE (CASa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAS
1
Mod. Amino Acid
S-(DIMETHYLARSENIC)CYSTEINE
2
MG
1
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:77 , HOH A:114 , HOH A:115 , HOH A:141 , HOH A:243 , ASP A:671
BINDING SITE FOR RESIDUE MG A 875
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_054039 (M681T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_054039
M
681
T
COPG1_HUMAN
Polymorphism
15648
A
M
681
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(8, 8)
Info
All Exons
Exon 1.16 (A:600-606)
Exon 1.17 (A:606-615 (gaps))
Exon 1.18 (A:615-662)
Exon 1.19a (A:663-720)
Exon 1.20a (A:720-752)
Exon 1.22a (A:753-799)
Exon 1.23 (A:799-832)
Exon 1.24c (A:832-873)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.15/1.16
2: Boundary 1.16/1.17
3: Boundary 1.17/1.18
4: Boundary 1.18/1.19a
5: Boundary 1.19a/1.20a
6: Boundary 1.20a/1.22a
7: Boundary 1.22a/1.23
8: Boundary 1.23/1.24c
9: Boundary 1.24c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000314797
1a
ENSE00002082831
chr3:
128968449-128968589
141
COPG1_HUMAN
1-13
13
0
-
-
1.2a
ENST00000314797
2a
ENSE00001506810
chr3:
128969525-128969577
53
COPG1_HUMAN
13-30
18
0
-
-
1.3
ENST00000314797
3
ENSE00001273101
chr3:
128971124-128971204
81
COPG1_HUMAN
31-57
27
0
-
-
1.4a
ENST00000314797
4a
ENSE00001273091
chr3:
128971466-128971537
72
COPG1_HUMAN
58-81
24
0
-
-
1.4d
ENST00000314797
4d
ENSE00001506809
chr3:
128971719-128971798
80
COPG1_HUMAN
82-108
27
0
-
-
1.5b
ENST00000314797
5b
ENSE00001273076
chr3:
128973511-128973586
76
COPG1_HUMAN
108-133
26
0
-
-
1.6c
ENST00000314797
6c
ENSE00001273070
chr3:
128973828-128973920
93
COPG1_HUMAN
134-164
31
0
-
-
1.7
ENST00000314797
7
ENSE00001273062
chr3:
128974911-128974997
87
COPG1_HUMAN
165-193
29
0
-
-
1.8
ENST00000314797
8
ENSE00001293983
chr3:
128976313-128976470
158
COPG1_HUMAN
194-246
53
0
-
-
1.9
ENST00000314797
9
ENSE00001328400
chr3:
128976570-128976703
134
COPG1_HUMAN
246-291
46
0
-
-
1.10b
ENST00000314797
10b
ENSE00001305285
chr3:
128979176-128979243
68
COPG1_HUMAN
291-313
23
0
-
-
1.11
ENST00000314797
11
ENSE00001330234
chr3:
128979462-128979650
189
COPG1_HUMAN
314-376
63
0
-
-
1.12a
ENST00000314797
12a
ENSE00001273027
chr3:
128982747-128982842
96
COPG1_HUMAN
377-408
32
0
-
-
1.13b
ENST00000314797
13b
ENSE00001273019
chr3:
128984392-128984635
244
COPG1_HUMAN
409-490
82
0
-
-
1.14a
ENST00000314797
14a
ENSE00001273012
chr3:
128985867-128985942
76
COPG1_HUMAN
490-515
26
0
-
-
1.15
ENST00000314797
15
ENSE00001273003
chr3:
128986780-128986883
104
COPG1_HUMAN
515-550
36
0
-
-
1.16
ENST00000314797
16
ENSE00001272992
chr3:
128987338-128987463
126
COPG1_HUMAN
550-592
43
1
A:600-606
7
1.17
ENST00000314797
17
ENSE00001272980
chr3:
128987775-128987843
69
COPG1_HUMAN
592-615
24
1
A:606-615 (gaps)
24
1.18
ENST00000314797
18
ENSE00001272966
chr3:
128990610-128990752
143
COPG1_HUMAN
615-662
48
1
A:615-662
48
1.19a
ENST00000314797
19a
ENSE00001272959
chr3:
128991087-128991258
172
COPG1_HUMAN
663-720
58
1
A:663-720
58
1.20a
ENST00000314797
20a
ENSE00001305758
chr3:
128991650-128991747
98
COPG1_HUMAN
720-752
33
1
A:720-752
33
1.22a
ENST00000314797
22a
ENSE00001324786
chr3:
128993681-128993819
139
COPG1_HUMAN
753-799
47
1
A:753-799
47
1.23
ENST00000314797
23
ENSE00001303168
chr3:
128994037-128994135
99
COPG1_HUMAN
799-832
34
1
A:799-832
34
1.24c
ENST00000314797
24c
ENSE00001324609
chr3:
128996137-128996614
478
COPG1_HUMAN
832-874
43
1
A:832-873
42
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1r4xa1 (A:600-762)
2a: SCOP_d1r4xa2 (A:763-873)
View:
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Classes
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)
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)
Folds
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Clathrin adaptor appendage domain
(28)
Family
:
Coatomer appendage domain
(2)
Protein domain
:
Coatomer gamma subunit C-terminal domain, first subdomain
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1r4xa1
A:600-762
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Subdomain of clathrin and coatomer appendage domain
(16)
Superfamily
:
Subdomain of clathrin and coatomer appendage domain
(16)
Family
:
Coatomer appendage domain
(2)
Protein domain
:
Coatomer gamma subunit, C-terminal subdomain
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1r4xa2
A:763-873
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1r4xA02 (A:760-873)
2a: CATH_1r4xA01 (A:600-759)
View:
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
[code=3.30.310.30, no name defined]
(13)
Human (Homo sapiens)
(1)
1a
1r4xA02
A:760-873
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Clathrin adaptor appendage domain; domain 1
(2)
Human (Homo sapiens)
(1)
2a
1r4xA01
A:600-759
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Chain A
Asymmetric Unit 1
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