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1R4R
Asym. Unit
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Asym.Unit (52 KB)
Biol.Unit 1 (47 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA
Authors
:
B. F. Luisi, W. X. Xu, Z. Otwinowski, L. P. Freedman, K. R. Yamamoto, P. B. Sigler
Date
:
07 Oct 03 (Deposition) - 28 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Gr, Steroid Receptor, Protein-Dna Complex, Glucocorticoid, Ir3, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. F. Luisi, W. X. Xu, Z. Otwinowski, L. P. Freedman, K. R. Yamamoto, P. B. Sigler
Crystallographic Analysis Of The Interaction Of The Glucocorticoid Receptor With Dna
Nature V. 352 497 1991
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:440 , CYS A:443 , CYS A:457 , CYS A:460
BINDING SITE FOR RESIDUE ZN A 526
2
AC2
SOFTWARE
CYS A:476 , CYS A:482 , CYS A:492 , CYS A:495
BINDING SITE FOR RESIDUE ZN A 527
3
AC3
SOFTWARE
CYS B:440 , CYS B:443 , CYS B:457 , CYS B:460
BINDING SITE FOR RESIDUE ZN B 526
4
AC4
SOFTWARE
CYS B:476 , CYS B:482 , CYS B:492 , CYS B:495
BINDING SITE FOR RESIDUE ZN B 527
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
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1: NUCLEAR_REC_DBD_2 (A:440-510,B:440-510)
2: NUCLEAR_REC_DBD_1 (A:440-466,B:440-466)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUCLEAR_REC_DBD_2
PS51030
Nuclear hormone receptors DNA-binding domain profile.
GCR_RAT
437-512
2
A:440-510
B:440-510
2
NUCLEAR_REC_DBD_1
PS00031
Nuclear hormones receptors DNA-binding region signature.
GCR_RAT
440-466
2
A:440-466
B:440-466
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
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1a: SCOP_d1r4ra_ (A:)
1b: SCOP_d1r4rb_ (B:)
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Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
Nuclear receptor
(49)
Protein domain
:
Glucocorticoid receptor DNA-binding domain
(11)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(11)
1a
d1r4ra_
A:
1b
d1r4rb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1r4rA00 (A:438-510)
1b: CATH_1r4rB00 (B:434-510)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Erythroid Transcription Factor GATA-1; Chain A
(61)
Homologous Superfamily
:
Erythroid Transcription Factor GATA-1, subunit A
(61)
[unclassified]
(30)
1a
1r4rA00
A:438-510
1b
1r4rB00
B:434-510
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_zf_C4_1r4rB01 (B:440-507)
1b: PFAM_zf_C4_1r4rB02 (B:440-507)
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Clan
:
no clan defined [family: zf-C4]
(14)
Family
:
zf-C4
(14)
Rattus norvegicus (Rat)
(6)
1a
zf-C4-1r4rB01
B:440-507
1b
zf-C4-1r4rB02
B:440-507
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Asymmetric Unit 1
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Asym.Unit (52 KB)
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