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1R4C
Biol. Unit 2
Info
Asym.Unit (152 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (38 KB)
Biol.Unit 3 (39 KB)
Biol.Unit 4 (39 KB)
Biol.Unit 5 (143 KB)
Biol.Unit 6 (146 KB)
Biol.Unit 7 (74 KB)
Biol.Unit 8 (74 KB)
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(1)
Title
:
N-TRUNCATED HUMAN CYSTATIN C; DIMERIC FORM WITH 3D DOMAIN SWAPPING
Authors
:
R. Janowski, M. Abrahamson, A. Grubb, M. Jaskolski
Date
:
06 Oct 03 (Deposition) - 21 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.18
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D (2x)
Biol. Unit 6: E,F,G,H (2x)
Biol. Unit 7: A,B,E,F (1x)
Biol. Unit 8: C,D,G,H (1x)
Keywords
:
Human Cystatin C, N-Truncation, 3D Domain Swapping, Amyloid Formation, Inhibitor Of C1 And C13 Cysteine Proteases, Amyloid Angiopathy And Cerebral Hemorrhage, Hydrolase Inhibitor
(Keyword Search:
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Reference
:
R. Janowski, M. Abrahamson, A. Grubb, M. Jaskolski
Domain Swapping In N-Truncated Human Cystatin C.
J. Mol. Biol. V. 341 151 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_002207 (L68Q, chain C/D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_002207
L
94
Q
CYTC_HUMAN
Disease (AMYL6)
28939068
C/D
L
68
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYSTATIN (C:54-67,D:54-67)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYSTATIN
PS00287
Cysteine proteases inhibitors signature.
CYTC_HUMAN
80-93
2
-
-
C:54-67
D:54-67
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1r4ca_ (A:)
1b: SCOP_d1r4cf_ (F:)
1c: SCOP_d1r4cg_ (G:)
1d: SCOP_d1r4ch_ (H:)
1e: SCOP_d1r4cb_ (B:)
1f: SCOP_d1r4cc_ (C:)
1g: SCOP_d1r4cd_ (D:)
1h: SCOP_d1r4ce_ (E:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Cystatin/monellin
(68)
Family
:
Cystatins
(31)
Protein domain
:
Cystatin C
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1r4ca_
A:
1b
d1r4cf_
F:
1c
d1r4cg_
G:
1d
d1r4ch_
H:
1e
d1r4cb_
B:
1f
d1r4cc_
C:
1g
d1r4cd_
D:
1h
d1r4ce_
E:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1r4cA00 (A:11-120)
1b: CATH_1r4cB00 (B:11-120)
1c: CATH_1r4cC00 (C:11-120)
1d: CATH_1r4cD00 (D:11-120)
1e: CATH_1r4cE00 (E:11-120)
1f: CATH_1r4cF00 (F:11-120)
1g: CATH_1r4cG00 (G:11-120)
1h: CATH_1r4cH00 (H:11-120)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.10, no name defined]
(37)
Human (Homo sapiens)
(13)
1a
1r4cA00
A:11-120
1b
1r4cB00
B:11-120
1c
1r4cC00
C:11-120
1d
1r4cD00
D:11-120
1e
1r4cE00
E:11-120
1f
1r4cF00
F:11-120
1g
1r4cG00
G:11-120
1h
1r4cH00
H:11-120
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Cystatin_1r4cH01 (H:11-106)
1b: PFAM_Cystatin_1r4cH02 (H:11-106)
1c: PFAM_Cystatin_1r4cH03 (H:11-106)
1d: PFAM_Cystatin_1r4cH04 (H:11-106)
1e: PFAM_Cystatin_1r4cH05 (H:11-106)
1f: PFAM_Cystatin_1r4cH06 (H:11-106)
1g: PFAM_Cystatin_1r4cH07 (H:11-106)
1h: PFAM_Cystatin_1r4cH08 (H:11-106)
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Clan
:
Cystatin
(20)
Family
:
Cystatin
(15)
Homo sapiens (Human)
(12)
1a
Cystatin-1r4cH01
H:11-106
1b
Cystatin-1r4cH02
H:11-106
1c
Cystatin-1r4cH03
H:11-106
1d
Cystatin-1r4cH04
H:11-106
1e
Cystatin-1r4cH05
H:11-106
1f
Cystatin-1r4cH06
H:11-106
1g
Cystatin-1r4cH07
H:11-106
1h
Cystatin-1r4cH08
H:11-106
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Asymmetric Unit 1
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Asym.Unit (152 KB)
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Biol.Unit 3 (39 KB)
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