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1R3N
Asym. Unit
Info
Asym.Unit (546 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (142 KB)
Biol.Unit 3 (140 KB)
Biol.Unit 4 (139 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BETA-ALANINE SYNTHASE FROM SACCHAROMYCES KLUYVERI
Authors
:
S. Lundgren, Z. Gojkovic, J. Piskur, D. Dobritzsch
Date
:
02 Oct 03 (Deposition) - 11 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Alpha And Beta Protein, Di-Zinc Center, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Lundgren, Z. Gojkovic, J. Piskur, D. Dobritzsch
Yeast Beta-Alanine Synthase Shares A Structural Scaffold And Origin With Dizinc-Dependent Exopeptidases
J. Biol. Chem. V. 278 51851 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: BETA-AMINO ISOBUTYRATE (BIBa)
1b: BETA-AMINO ISOBUTYRATE (BIBb)
1c: BETA-AMINO ISOBUTYRATE (BIBc)
1d: BETA-AMINO ISOBUTYRATE (BIBd)
1e: BETA-AMINO ISOBUTYRATE (BIBe)
1f: BETA-AMINO ISOBUTYRATE (BIBf)
1g: BETA-AMINO ISOBUTYRATE (BIBg)
1h: BETA-AMINO ISOBUTYRATE (BIBh)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
2m: ZINC ION (ZNm)
2n: ZINC ION (ZNn)
2o: ZINC ION (ZNo)
2p: ZINC ION (ZNp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BIB
8
Ligand/Ion
BETA-AMINO ISOBUTYRATE
2
ZN
16
Ligand/Ion
ZINC ION
[
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]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:114 , ASP A:125 , HIS A:226 , ZN A:501 , HOH A:2503 , HOH A:2504
BINDING SITE FOR RESIDUE ZN A 500
02
AC2
SOFTWARE
ASP A:125 , GLU A:160 , GLN A:229 , HIS A:421 , ZN A:500 , HOH A:2503
BINDING SITE FOR RESIDUE ZN A 501
03
AC3
SOFTWARE
HIS B:114 , ASP B:125 , GLU B:159 , HIS B:226 , ZN B:501 , HOH B:1503 , HOH B:1506
BINDING SITE FOR RESIDUE ZN B 500
04
AC4
SOFTWARE
ASP B:125 , GLU B:160 , GLN B:229 , HIS B:421 , ZN B:500 , HOH B:1506
BINDING SITE FOR RESIDUE ZN B 501
05
AC5
SOFTWARE
HIS C:114 , ASP C:125 , HIS C:226 , ZN C:501 , HOH C:3503 , HOH C:3504
BINDING SITE FOR RESIDUE ZN C 500
06
AC6
SOFTWARE
ASP C:125 , GLU C:160 , GLN C:229 , HIS C:421 , ZN C:500 , HOH C:3503
BINDING SITE FOR RESIDUE ZN C 501
07
AC7
SOFTWARE
HIS D:114 , ASP D:125 , HIS D:226 , ZN D:501 , HOH D:4503 , HOH D:4504
BINDING SITE FOR RESIDUE ZN D 500
08
AC8
SOFTWARE
ASP D:125 , GLU D:160 , HIS D:421 , ZN D:500 , HOH D:4503
BINDING SITE FOR RESIDUE ZN D 501
09
AC9
SOFTWARE
HIS E:114 , ASP E:125 , GLU E:159 , HIS E:226 , ZN E:501 , HOH E:6503
BINDING SITE FOR RESIDUE ZN E 500
10
BC1
SOFTWARE
ASP E:125 , GLU E:160 , HIS E:421 , ZN E:500 , HOH E:6503
BINDING SITE FOR RESIDUE ZN E 501
11
BC2
SOFTWARE
HIS F:114 , ASP F:125 , HIS F:226 , ZN F:501 , HOH F:502 , HOH F:504
BINDING SITE FOR RESIDUE ZN F 500
12
BC3
SOFTWARE
ASP F:125 , GLU F:160 , GLN F:229 , HIS F:421 , ZN F:500 , HOH F:504
BINDING SITE FOR RESIDUE ZN F 501
13
BC4
SOFTWARE
HIS G:114 , ASP G:125 , GLY G:126 , HIS G:226 , ZN G:501 , HOH G:8503 , HOH G:8504
BINDING SITE FOR RESIDUE ZN G 500
14
BC5
SOFTWARE
ASP G:125 , GLU G:160 , HIS G:421 , ZN G:500 , HOH G:8503
BINDING SITE FOR RESIDUE ZN G 501
15
BC6
SOFTWARE
HIS H:114 , ASP H:125 , HIS H:226 , ZN H:501 , HOH H:502 , HOH H:503
BINDING SITE FOR RESIDUE ZN H 500
16
BC7
SOFTWARE
ASP H:125 , GLU H:160 , GLN H:229 , HIS H:421 , ZN H:500 , HOH H:502
BINDING SITE FOR RESIDUE ZN H 501
17
BC8
SOFTWARE
TRP A:251 , ARG A:322 , GLY A:396 , HOH A:2508 , HIS B:262 , ASN B:309
BINDING SITE FOR RESIDUE BIB B 1502
18
BC9
SOFTWARE
HIS A:262 , ASN A:309 , TYR B:249 , ARG B:322 , GLY B:396
BINDING SITE FOR RESIDUE BIB A 2502
19
CC1
SOFTWARE
TRP C:251 , ARG C:322 , GLY C:396 , HIS D:262 , ASN D:309
BINDING SITE FOR RESIDUE BIB C 3502
20
CC2
SOFTWARE
HIS C:262 , ASN C:309 , SER D:167 , TYR D:249 , TRP D:251 , ARG D:322 , ALA D:395 , GLY D:396
BINDING SITE FOR RESIDUE BIB D 4502
21
CC3
SOFTWARE
TYR E:249 , TRP E:251 , ARG E:322 , ALA E:395 , GLY E:396 , ASN F:309
BINDING SITE FOR RESIDUE BIB E 5502
22
CC4
SOFTWARE
HIS E:262 , ASN E:309 , TYR F:249 , ARG F:322 , GLY F:396
BINDING SITE FOR RESIDUE BIB E 6502
23
CC5
SOFTWARE
ARG G:322 , GLY G:396 , HIS H:262 , ASN H:309
BINDING SITE FOR RESIDUE BIB G 7502
24
CC6
SOFTWARE
HIS G:262 , ASN G:309 , ARG H:322 , GLY H:396
BINDING SITE FOR RESIDUE BIB G 8502
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1r3na2 (A:248-363)
1b: SCOP_d1r3nb2 (B:248-363)
1c: SCOP_d1r3nc2 (C:248-363)
1d: SCOP_d1r3nd2 (D:248-363)
1e: SCOP_d1r3ne2 (E:248-363)
1f: SCOP_d1r3nf2 (F:248-363)
1g: SCOP_d1r3ng2 (G:248-363)
1h: SCOP_d1r3nh2 (H:248-363)
2a: SCOP_d1r3na1 (A:18-247,A:364-455)
2b: SCOP_d1r3nb1 (B:23-247,B:364-455)
2c: SCOP_d1r3nc1 (C:18-247,C:364-455)
2d: SCOP_d1r3nd1 (D:19-247,D:364-455)
2e: SCOP_d1r3ne1 (E:23-247,E:364-455)
2f: SCOP_d1r3nf1 (F:18-247,F:364-455)
2g: SCOP_d1r3ng1 (G:26-247,G:364-455)
2h: SCOP_d1r3nh1 (H:18-247,H:364-455)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Bacterial exopeptidase dimerisation domain
(12)
Family
:
Bacterial exopeptidase dimerisation domain
(12)
Protein domain
:
Peptidase-like beta-alanine synthase
(2)
Yeast (Saccharomyces kluyveri) [TaxId: 4934]
(2)
1a
d1r3na2
A:248-363
1b
d1r3nb2
B:248-363
1c
d1r3nc2
C:248-363
1d
d1r3nd2
D:248-363
1e
d1r3ne2
E:248-363
1f
d1r3nf2
F:248-363
1g
d1r3ng2
G:248-363
1h
d1r3nh2
H:248-363
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Bacterial dinuclear zinc exopeptidases
(55)
Protein domain
:
Peptidase-like beta-alanine synthase, catalytic domain
(2)
Yeast (Saccharomyces kluyveri) [TaxId: 4934]
(2)
2a
d1r3na1
A:18-247,A:364-455
2b
d1r3nb1
B:23-247,B:364-455
2c
d1r3nc1
C:18-247,C:364-455
2d
d1r3nd1
D:19-247,D:364-455
2e
d1r3ne1
E:23-247,E:364-455
2f
d1r3nf1
F:18-247,F:364-455
2g
d1r3ng1
G:26-247,G:364-455
2h
d1r3nh1
H:18-247,H:364-455
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1r3nB02 (B:248-363)
1b: CATH_1r3nC02 (C:248-363)
1c: CATH_1r3nD02 (D:248-363)
1d: CATH_1r3nE02 (E:248-363)
1e: CATH_1r3nF02 (F:248-363)
1f: CATH_1r3nG02 (G:248-363)
1g: CATH_1r3nH02 (H:248-363)
1h: CATH_1r3nA02 (A:248-363)
2a: CATH_1r3nG01 (G:26-247,G:364-455)
2b: CATH_1r3nB01 (B:23-247,B:364-455)
2c: CATH_1r3nE01 (E:23-247,E:364-455)
2d: CATH_1r3nD01 (D:19-247,D:364-455)
2e: CATH_1r3nA01 (A:18-247,A:364-455)
2f: CATH_1r3nC01 (C:18-247,C:364-455)
2g: CATH_1r3nF01 (F:18-247,F:364-455)
2h: CATH_1r3nH01 (H:18-247,H:364-455)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.360, no name defined]
(23)
Lachancea kluyveri. Organism_taxid: 4934.
(2)
1a
1r3nB02
B:248-363
1b
1r3nC02
C:248-363
1c
1r3nD02
D:248-363
1d
1r3nE02
E:248-363
1e
1r3nF02
F:248-363
1f
1r3nG02
G:248-363
1g
1r3nH02
H:248-363
1h
1r3nA02
A:248-363
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Lachancea kluyveri. Organism_taxid: 4934.
(2)
2a
1r3nG01
G:26-247,G:364-455
2b
1r3nB01
B:23-247,B:364-455
2c
1r3nE01
E:23-247,E:364-455
2d
1r3nD01
D:19-247,D:364-455
2e
1r3nA01
A:18-247,A:364-455
2f
1r3nC01
C:18-247,C:364-455
2g
1r3nF01
F:18-247,F:364-455
2h
1r3nH01
H:18-247,H:364-455
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (546 KB)
Header - Asym.Unit
Biol.Unit 1 (142 KB)
Header - Biol.Unit 1
Biol.Unit 2 (142 KB)
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Biol.Unit 3 (140 KB)
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