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1R3H
Biol. Unit 1
Info
Asym.Unit (235 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (60 KB)
Biol.Unit 4 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF T10
Authors
:
M. G. Rudolph, I. A. Wilson
Date
:
02 Oct 03 (Deposition) - 30 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Class Ib Mhc, Gammadelta T Cell Ligand, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. G. Rudolph, C. Wingren, M. P. Crowley, Y. H. Chien, I. A. Wilson
Combined Pseudo-Merohedral Twinning, Non-Crystallographic Symmetry And Pseudo-Translation In A Monoclinic Crystal Form Of The Gammadelta T-Cell Ligand T10.
Acta Crystallogr. , Sect. D V. 60 656 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_076691 (D8076N, chain B/D/F/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076691
D
96
N
B2MG_HUMAN
Disease (AMYL8)
398122820
B
D
F
B
D
2076
4076
6076
8076
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:2078-2084)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
B:2078-2084
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1r3hb_ (B:)
1b: SCOP_d1r3hd_ (D:)
1c: SCOP_d1r3hf_ (F:)
1d: SCOP_d1r3hh_ (H:)
2a: SCOP_d1r3ha1 (A:1181-1276)
2b: SCOP_d1r3hc1 (C:3181-3276)
2c: SCOP_d1r3he1 (E:5181-5273)
2d: SCOP_d1r3hg1 (G:7181-7274)
3a: SCOP_d1r3ha2 (A:1001-1180)
3b: SCOP_d1r3hc2 (C:3001-3180)
3c: SCOP_d1r3he2 (E:5001-5180)
3d: SCOP_d1r3hg2 (G:7001-7180)
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)
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Folds
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)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1r3hb_
B:
1b
d1r3hd_
D:
1c
d1r3hf_
F:
1d
d1r3hh_
H:
Protein domain
:
Class I MHC homolog, alpha-3 domain
(6)
Mouse (Mus musculus), t10 [TaxId: 10090]
(1)
2a
d1r3ha1
A:1181-1276
2b
d1r3hc1
C:3181-3276
2c
d1r3he1
E:5181-5273
2d
d1r3hg1
G:7181-7274
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC homolog
(6)
Mouse (Mus musculus), t10 [TaxId: 10090]
(1)
3a
d1r3ha2
A:1001-1180
3b
d1r3hc2
C:3001-3180
3c
d1r3he2
E:5001-5180
3d
d1r3hg2
G:7001-7180
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1r3hA01 (A:1001-1182)
1b: CATH_1r3hC01 (C:3001-3182)
1c: CATH_1r3hE01 (E:5001-5182)
1d: CATH_1r3hG01 (G:7001-7182)
2a: CATH_1r3hB00 (B:2001-2099)
2b: CATH_1r3hA02 (A:1184-1276)
2c: CATH_1r3hC02 (C:3184-3276)
2d: CATH_1r3hG02 (G:7184-7274)
2e: CATH_1r3hE02 (E:5184-5273)
2f: CATH_1r3hD00 (D:4001-4099)
2g: CATH_1r3hF00 (F:6001-6099)
2h: CATH_1r3hH00 (H:8001-8099)
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(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
1r3hA01
A:1001-1182
1b
1r3hC01
C:3001-3182
1c
1r3hE01
E:5001-5182
1d
1r3hG01
G:7001-7182
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1r3hB00
B:2001-2099
2b
1r3hA02
A:1184-1276
2c
1r3hC02
C:3184-3276
2d
1r3hG02
G:7184-7274
2e
1r3hE02
E:5184-5273
2f
1r3hD00
D:4001-4099
2g
1r3hF00
F:6001-6099
2h
1r3hH00
H:8001-8099
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_C1_set_1r3hH01 (H:8011-8092)
1b: PFAM_C1_set_1r3hH02 (H:8011-8092)
1c: PFAM_C1_set_1r3hH03 (H:8011-8092)
1d: PFAM_C1_set_1r3hH04 (H:8011-8092)
2a: PFAM_C1_set_1r3hG01 (G:7189-7271)
2b: PFAM_C1_set_1r3hG02 (G:7189-7271)
2c: PFAM_C1_set_1r3hG03 (G:7189-7271)
2d: PFAM_C1_set_1r3hG04 (G:7189-7271)
3a: PFAM_MHC_I_1r3hG05 (G:7001-7179)
3b: PFAM_MHC_I_1r3hG06 (G:7001-7179)
3c: PFAM_MHC_I_1r3hG07 (G:7001-7179)
3d: PFAM_MHC_I_1r3hG08 (G:7001-7179)
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Families
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)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-1r3hH01
H:8011-8092
1b
C1-set-1r3hH02
H:8011-8092
1c
C1-set-1r3hH03
H:8011-8092
1d
C1-set-1r3hH04
H:8011-8092
Mus musculus (Mouse)
(118)
2a
C1-set-1r3hG01
G:7189-7271
2b
C1-set-1r3hG02
G:7189-7271
2c
C1-set-1r3hG03
G:7189-7271
2d
C1-set-1r3hG04
G:7189-7271
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Mus musculus (Mouse)
(60)
3a
MHC_I-1r3hG05
G:7001-7179
3b
MHC_I-1r3hG06
G:7001-7179
3c
MHC_I-1r3hG07
G:7001-7179
3d
MHC_I-1r3hG08
G:7001-7179
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Asym.Unit (235 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (60 KB)
Header - Biol.Unit 3
Biol.Unit 4 (60 KB)
Header - Biol.Unit 4
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