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1R3H
Asym. Unit
Info
Asym.Unit (235 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (60 KB)
Biol.Unit 4 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF T10
Authors
:
M. G. Rudolph, I. A. Wilson
Date
:
02 Oct 03 (Deposition) - 30 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Class Ib Mhc, Gammadelta T Cell Ligand, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. G. Rudolph, C. Wingren, M. P. Crowley, Y. H. Chien, I. A. Wilson
Combined Pseudo-Merohedral Twinning, Non-Crystallographic Symmetry And Pseudo-Translation In A Monoclinic Crystal Form Of The Gammadelta T-Cell Ligand T10.
Acta Crystallogr. , Sect. D V. 60 656 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
[
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_076691 (D8076N, chain B/D/F/H, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076691
D
96
N
B2MG_HUMAN
Disease (AMYL8)
398122820
B
D
F
H
D
2076
4076
6076
8076
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:2078-2084,D:4078-4084,F:6078-608...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
4
B:2078-2084
D:4078-4084
F:6078-6084
H:8078-8084
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1r3hb_ (B:)
1b: SCOP_d1r3hd_ (D:)
1c: SCOP_d1r3hf_ (F:)
1d: SCOP_d1r3hh_ (H:)
2a: SCOP_d1r3ha1 (A:1181-1276)
2b: SCOP_d1r3hc1 (C:3181-3276)
2c: SCOP_d1r3he1 (E:5181-5273)
2d: SCOP_d1r3hg1 (G:7181-7274)
3a: SCOP_d1r3ha2 (A:1001-1180)
3b: SCOP_d1r3hc2 (C:3001-3180)
3c: SCOP_d1r3he2 (E:5001-5180)
3d: SCOP_d1r3hg2 (G:7001-7180)
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(
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Folds
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(
)
Superfamilies
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)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1r3hb_
B:
1b
d1r3hd_
D:
1c
d1r3hf_
F:
1d
d1r3hh_
H:
Protein domain
:
Class I MHC homolog, alpha-3 domain
(6)
Mouse (Mus musculus), t10 [TaxId: 10090]
(1)
2a
d1r3ha1
A:1181-1276
2b
d1r3hc1
C:3181-3276
2c
d1r3he1
E:5181-5273
2d
d1r3hg1
G:7181-7274
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC homolog
(6)
Mouse (Mus musculus), t10 [TaxId: 10090]
(1)
3a
d1r3ha2
A:1001-1180
3b
d1r3hc2
C:3001-3180
3c
d1r3he2
E:5001-5180
3d
d1r3hg2
G:7001-7180
[
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]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1r3hA01 (A:1001-1182)
1b: CATH_1r3hC01 (C:3001-3182)
1c: CATH_1r3hE01 (E:5001-5182)
1d: CATH_1r3hG01 (G:7001-7182)
2a: CATH_1r3hB00 (B:2001-2099)
2b: CATH_1r3hA02 (A:1184-1276)
2c: CATH_1r3hC02 (C:3184-3276)
2d: CATH_1r3hG02 (G:7184-7274)
2e: CATH_1r3hE02 (E:5184-5273)
2f: CATH_1r3hD00 (D:4001-4099)
2g: CATH_1r3hF00 (F:6001-6099)
2h: CATH_1r3hH00 (H:8001-8099)
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(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
1r3hA01
A:1001-1182
1b
1r3hC01
C:3001-3182
1c
1r3hE01
E:5001-5182
1d
1r3hG01
G:7001-7182
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1r3hB00
B:2001-2099
2b
1r3hA02
A:1184-1276
2c
1r3hC02
C:3184-3276
2d
1r3hG02
G:7184-7274
2e
1r3hE02
E:5184-5273
2f
1r3hD00
D:4001-4099
2g
1r3hF00
F:6001-6099
2h
1r3hH00
H:8001-8099
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_C1_set_1r3hH01 (H:8011-8092)
1b: PFAM_C1_set_1r3hH02 (H:8011-8092)
1c: PFAM_C1_set_1r3hH03 (H:8011-8092)
1d: PFAM_C1_set_1r3hH04 (H:8011-8092)
2a: PFAM_C1_set_1r3hG01 (G:7189-7271)
2b: PFAM_C1_set_1r3hG02 (G:7189-7271)
2c: PFAM_C1_set_1r3hG03 (G:7189-7271)
2d: PFAM_C1_set_1r3hG04 (G:7189-7271)
3a: PFAM_MHC_I_1r3hG05 (G:7001-7179)
3b: PFAM_MHC_I_1r3hG06 (G:7001-7179)
3c: PFAM_MHC_I_1r3hG07 (G:7001-7179)
3d: PFAM_MHC_I_1r3hG08 (G:7001-7179)
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)
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-1r3hH01
H:8011-8092
1b
C1-set-1r3hH02
H:8011-8092
1c
C1-set-1r3hH03
H:8011-8092
1d
C1-set-1r3hH04
H:8011-8092
Mus musculus (Mouse)
(118)
2a
C1-set-1r3hG01
G:7189-7271
2b
C1-set-1r3hG02
G:7189-7271
2c
C1-set-1r3hG03
G:7189-7271
2d
C1-set-1r3hG04
G:7189-7271
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Mus musculus (Mouse)
(60)
3a
MHC_I-1r3hG05
G:7001-7179
3b
MHC_I-1r3hG06
G:7001-7179
3c
MHC_I-1r3hG07
G:7001-7179
3d
MHC_I-1r3hG08
G:7001-7179
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Asym.Unit (235 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (60 KB)
Header - Biol.Unit 3
Biol.Unit 4 (60 KB)
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