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1R38
Asym. Unit
Info
Asym.Unit (229 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (115 KB)
Biol.Unit 3 (223 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF H114A MUTANT OF CANDIDA TENUIS XYLOSE REDUCTASE
Authors
:
R. Kratzer, K. L. Kavanagh, D. K. Wilson, B. Nidetzky
Date
:
30 Sep 03 (Deposition) - 12 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Aldo-Keto Reductase, Beta-Alpha Barrel, Dimer, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Kratzer, K. L. Kavanagh, D. K. Wilson, B. Nidetzky
Studies Of The Enzymic Mechanism Of Candida Tenuis Xylose Reductase (Akr 2B5): X-Ray Structure And Catalytic Reaction Profile For The H113A Mutant
Biochemistry V. 43 4944 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
1b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
1c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
1d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:22 , CYS A:23 , TRP A:24 , ASP A:47 , TYR A:52 , LYS A:81 , SER A:169 , ASN A:170 , GLN A:191 , TYR A:217 , SER A:218 , SER A:219 , PHE A:220 , GLN A:223 , SER A:224 , PHE A:240 , ALA A:257 , ILE A:272 , LYS A:274 , SER A:275 , ASN A:276 , LEU A:277 , ARG A:280 , ASN A:284 , ASN A:310 , HOH A:974 , HOH A:1003 , HOH A:1036 , HOH A:1081 , HOH A:1089 , HOH A:1125
BINDING SITE FOR RESIDUE NAP A 950
2
AC2
SOFTWARE
GLY B:22 , CYS B:23 , TRP B:24 , ASP B:47 , TYR B:52 , LYS B:81 , SER B:169 , ASN B:170 , GLN B:191 , TYR B:217 , SER B:218 , SER B:219 , PHE B:220 , GLN B:223 , SER B:224 , PHE B:240 , ALA B:257 , ILE B:272 , PRO B:273 , LYS B:274 , SER B:275 , ASN B:276 , ARG B:280 , ASN B:284 , ASN B:310 , HOH B:966 , HOH B:973 , HOH B:987 , HOH B:1036 , HOH B:1045
BINDING SITE FOR RESIDUE NAP B 951
3
AC3
SOFTWARE
HOH A:1089 , GLY C:22 , CYS C:23 , TRP C:24 , ASP C:47 , TYR C:52 , LYS C:81 , SER C:169 , ASN C:170 , GLN C:191 , TYR C:217 , SER C:218 , SER C:219 , PHE C:220 , GLN C:223 , SER C:224 , PHE C:240 , ALA C:257 , ILE C:272 , PRO C:273 , LYS C:274 , SER C:275 , ASN C:276 , LEU C:277 , ARG C:280 , ASN C:284 , ASN C:310 , HOH C:979 , HOH C:1018 , HOH C:1020 , HOH C:1035
BINDING SITE FOR RESIDUE NAP C 952
4
AC4
SOFTWARE
GLY D:22 , CYS D:23 , TRP D:24 , ASP D:47 , TYR D:52 , LYS D:81 , SER D:169 , ASN D:170 , GLN D:191 , TYR D:217 , SER D:218 , SER D:219 , PHE D:220 , GLN D:223 , SER D:224 , PHE D:240 , ALA D:257 , ILE D:272 , PRO D:273 , LYS D:274 , SER D:275 , ASN D:276 , ARG D:280 , ASN D:284 , ASN D:310 , HOH D:967 , HOH D:971 , HOH D:981 , HOH D:1011 , HOH D:1195
BINDING SITE FOR RESIDUE NAP D 953
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (A:42-59,B:42-59,C:42-59,D:42-59)
2: ALDOKETO_REDUCTASE_2 (A:154-171,B:154-171,C:154-171,D:15...)
3: ALDOKETO_REDUCTASE_3 (A:272-287,B:272-287,C:272-287,D:27...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
XYL1_CANTE
42-59
4
A:42-59
B:42-59
C:42-59
D:42-59
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
XYL1_CANTE
154-171
4
A:154-171
B:154-171
C:154-171
D:154-171
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
XYL1_CANTE
272-287
4
A:272-287
B:272-287
C:272-287
D:272-287
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1r38a_ (A:)
1b: SCOP_d1r38b_ (B:)
1c: SCOP_d1r38c_ (C:)
1d: SCOP_d1r38d_ (D:)
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Protein Domains
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(
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Organisms
(
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
Xylose reductase
(8)
Fungus (Candida tenuis) [TaxId: 45596]
(8)
1a
d1r38a_
A:
1b
d1r38b_
B:
1c
d1r38c_
C:
1d
d1r38d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1r38A00 (A:4-322)
1b: CATH_1r38B00 (B:4-322)
1c: CATH_1r38C00 (C:4-322)
1d: CATH_1r38D00 (D:4-322)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Candida tenuis. Organism_taxid: 45596.
(7)
1a
1r38A00
A:4-322
1b
1r38B00
B:4-322
1c
1r38C00
C:4-322
1d
1r38D00
D:4-322
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aldo_ket_red_1r38D01 (D:18-305)
1b: PFAM_Aldo_ket_red_1r38D02 (D:18-305)
1c: PFAM_Aldo_ket_red_1r38D03 (D:18-305)
1d: PFAM_Aldo_ket_red_1r38D04 (D:18-305)
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Clan
:
no clan defined [family: Aldo_ket_red]
(94)
Family
:
Aldo_ket_red
(94)
Candida tenuis (Yeast)
(6)
1a
Aldo_ket_red-1r38D01
D:18-305
1b
Aldo_ket_red-1r38D02
D:18-305
1c
Aldo_ket_red-1r38D03
D:18-305
1d
Aldo_ket_red-1r38D04
D:18-305
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Asym.Unit (229 KB)
Header - Asym.Unit
Biol.Unit 1 (113 KB)
Header - Biol.Unit 1
Biol.Unit 2 (115 KB)
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Biol.Unit 3 (223 KB)
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