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1R1N
Biol. Unit 5
Info
Asym.Unit (498 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (60 KB)
Biol.Unit 4 (60 KB)
Biol.Unit 5 (61 KB)
Biol.Unit 6 (61 KB)
Biol.Unit 7 (61 KB)
Biol.Unit 8 (61 KB)
Biol.Unit 9 (60 KB)
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(1)
Title
:
TRI-NUCLEAR OXO-IRON CLUSTERS IN THE FERRIC BINDING PROTEIN FROM N. GONORRHOEAE
Authors
:
H. Zhu, D. Alexeev, D. J. Hunter, D. J. Campopiano, P. J. Sadler
Date
:
24 Sep 03 (Deposition) - 09 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.74
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Keywords
:
Iron Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zhu, D. Alexeev, D. J. Hunter, D. J. Campopiano, P. J. Sadler
Oxo-Iron Clusters In A Bacterial Iron-Trafficking Protein: New Roles For A Conserved Motif.
Biochem. J. V. 376 35 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: OXO-IRON CLUSTER 2 (CN1a)
1b: OXO-IRON CLUSTER 2 (CN1b)
1c: OXO-IRON CLUSTER 2 (CN1c)
1d: OXO-IRON CLUSTER 2 (CN1d)
2a: OXO-IRON CLUSTER 1 (CNBa)
2b: OXO-IRON CLUSTER 1 (CNBb)
2c: OXO-IRON CLUSTER 1 (CNBc)
2d: OXO-IRON CLUSTER 1 (CNBd)
3a: OXO-IRON CLUSTER 3 (CNFa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CN1
1
Ligand/Ion
OXO-IRON CLUSTER 2
2
CNB
-1
Ligand/Ion
OXO-IRON CLUSTER 1
3
CNF
-1
Ligand/Ion
OXO-IRON CLUSTER 3
[
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Sites
(1, 1)
Info
All Sites
1: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ASN E:175 , SER E:176 , TYR E:195 , TYR E:196 , ARG E:262 , HOH E:563 , HOH E:579 , HOH E:693 , HOH E:707
BINDING SITE FOR RESIDUE CN1 E 400
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_1 (E:97-114)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
FBP_NEIGO
119-136
1
-
-
-
-
E:97-114
-
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d1r1na_ (A:)
1b: SCOP_d1r1nb_ (B:)
1c: SCOP_d1r1nc_ (C:)
1d: SCOP_d1r1nd_ (D:)
1e: SCOP_d1r1ne_ (E:)
1f: SCOP_d1r1nf_ (F:)
1g: SCOP_d1r1ng_ (G:)
1h: SCOP_d1r1nh_ (H:)
1i: SCOP_d1r1ni_ (I:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Ferric-binding protein FbpA
(25)
Neisseria gonorrhoeae [TaxId: 485]
(5)
1a
d1r1na_
A:
1b
d1r1nb_
B:
1c
d1r1nc_
C:
1d
d1r1nd_
D:
1e
d1r1ne_
E:
1f
d1r1nf_
F:
1g
d1r1ng_
G:
1h
d1r1nh_
H:
1i
d1r1ni_
I:
[
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CATH Domains
(1, 18)
Info
all CATH domains
1a: CATH_1r1nA02 (A:1-101,A:226-277)
1b: CATH_1r1nB02 (B:1-101,B:226-277)
1c: CATH_1r1nB01 (B:102-225,B:278-309)
1d: CATH_1r1nC01 (C:102-225,C:278-309)
1e: CATH_1r1nD01 (D:102-225,D:278-309)
1f: CATH_1r1nE01 (E:102-225,E:278-309)
1g: CATH_1r1nF01 (F:102-225,F:278-309)
1h: CATH_1r1nG01 (G:102-225,G:278-309)
1i: CATH_1r1nH01 (H:102-225,H:278-309)
1j: CATH_1r1nI01 (I:102-225,I:278-309)
1k: CATH_1r1nC02 (C:1-101,C:226-277)
1l: CATH_1r1nD02 (D:1-101,D:226-277)
1m: CATH_1r1nE02 (E:1-101,E:226-277)
1n: CATH_1r1nF02 (F:1-101,F:226-277)
1o: CATH_1r1nG02 (G:1-101,G:226-277)
1p: CATH_1r1nH02 (H:1-101,H:226-277)
1q: CATH_1r1nI02 (I:1-101,I:226-277)
1r: CATH_1r1nA01 (A:102-225,A:278-309)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Neisseria gonorrhoeae. Organism_taxid: 485
(1)
1a
1r1nA02
A:1-101,A:226-277
1b
1r1nB02
B:1-101,B:226-277
1c
1r1nB01
B:102-225,B:278-309
1d
1r1nC01
C:102-225,C:278-309
1e
1r1nD01
D:102-225,D:278-309
1f
1r1nE01
E:102-225,E:278-309
1g
1r1nF01
F:102-225,F:278-309
1h
1r1nG01
G:102-225,G:278-309
1i
1r1nH01
H:102-225,H:278-309
1j
1r1nI01
I:102-225,I:278-309
1k
1r1nC02
C:1-101,C:226-277
1l
1r1nD02
D:1-101,D:226-277
1m
1r1nE02
E:1-101,E:226-277
1n
1r1nF02
F:1-101,F:226-277
1o
1r1nG02
G:1-101,G:226-277
1p
1r1nH02
H:1-101,H:226-277
1q
1r1nI02
I:1-101,I:226-277
1r
1r1nA01
A:102-225,A:278-309
[
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Pfam Domains
(1, 9)
Info
all PFAM domains
1a: PFAM_SBP_bac_1_1r1nI01 (I:6-256)
1b: PFAM_SBP_bac_1_1r1nI02 (I:6-256)
1c: PFAM_SBP_bac_1_1r1nI03 (I:6-256)
1d: PFAM_SBP_bac_1_1r1nI04 (I:6-256)
1e: PFAM_SBP_bac_1_1r1nI05 (I:6-256)
1f: PFAM_SBP_bac_1_1r1nI06 (I:6-256)
1g: PFAM_SBP_bac_1_1r1nI07 (I:6-256)
1h: PFAM_SBP_bac_1_1r1nI08 (I:6-256)
1i: PFAM_SBP_bac_1_1r1nI09 (I:6-256)
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)
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)
Clan
:
PBP
(391)
Family
:
SBP_bac_1
(83)
Neisseria gonorrhoeae
(3)
1a
SBP_bac_1-1r1nI01
I:6-256
1b
SBP_bac_1-1r1nI02
I:6-256
1c
SBP_bac_1-1r1nI03
I:6-256
1d
SBP_bac_1-1r1nI04
I:6-256
1e
SBP_bac_1-1r1nI05
I:6-256
1f
SBP_bac_1-1r1nI06
I:6-256
1g
SBP_bac_1-1r1nI07
I:6-256
1h
SBP_bac_1-1r1nI08
I:6-256
1i
SBP_bac_1-1r1nI09
I:6-256
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Asym.Unit (498 KB)
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