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1R1A
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Asym.Unit (115 KB)
Biol.Unit 1, α-C (6.2 MB)
Biol.Unit 1 (6.2 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS SEROTYPE 1A (HRV1A)
Authors
:
S. Kim, M. G. Rossmann
Date
:
15 Mar 89 (Deposition) - 15 Jul 90 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1,2,3,4 (60x)
Keywords
:
Rhinovirus Coat Protein, Icosahedral Virus, Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. S. Kim, T. J. Smith, M. S. Chapman, M. G. Rossmann, D. C. Pevear, F. J. Dutko, P. J. Felock, G. D. Diana, M. A. Mckinlay
Crystal Structure Of Human Rhinovirus Serotype 1A (Hrv1A).
J. Mol. Biol. V. 210 91 1989
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SUCROSE (SUCa)
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Label:
No.
Name
Count
Type
Full Name
1
SUC
1
Ligand/Ion
SUCROSE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER 1:43 , ASN 1:44 , GLN 1:46 , ILE 1:101 , THR 1:102 , LEU 1:103 , MET 1:195 , ASN 1:215 , MET 1:217 , HIS 1:241 , HIS 1:263 , ARG 3:114
BINDING SITE FOR RESIDUE SUC 1 288
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POLG_HRV1A_002 (N51N, chain 2, )
2: VAR_POLG_HRV1A_004 (T92T, chain 3, )
3: VAR_POLG_HRV1A_005 (I184I, chain 1, )
4: VAR_POLG_HRV1A_003 (C221C, chain 2, )
5: VAR_POLG_HRV1A_006 (L231L, chain 1, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_HRV1A_002
*
D
120
N
POLG_HRV1A
---
---
2
N
51
N
2
UniProt
VAR_POLG_HRV1A_004
*
Q
424
T
POLG_HRV1A
---
---
3
T
92
T
3
UniProt
VAR_POLG_HRV1A_005
*
L
754
I
POLG_HRV1A
---
---
1
I
184
I
4
UniProt
VAR_POLG_HRV1A_003
*
S
290
C
POLG_HRV1A
---
---
2
C
221
C
5
UniProt
VAR_POLG_HRV1A_006
*
H
801
L
POLG_HRV1A
---
---
1
L
231
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1r1a_1 (4:,2:)
1b: SCOP_d1r1a1_ (1:)
1c: SCOP_d1r1a3_ (3:)
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Rhinovirus coat proteins
(46)
Human rhinovirus A 1A (HRV-1A) [TaxId: 12134]
(4)
1a
d1r1a.1
4:,2:
1b
d1r1a1_
1:
1c
d1r1a3_
3:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1r1a300 (3:1-238)
1b: CATH_1r1a200 (2:11-263)
1c: CATH_1r1a100 (1:5-287)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Human rhinovirus 1a. Organism_taxid: 12134.
(1)
1a
1r1a300
3:1-238
1b
1r1a200
2:11-263
1c
1r1a100
1:5-287
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Pfam Domains
(0, 0)
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Asym.Unit (115 KB)
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