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1R17
Biol. Unit 1
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Asym.Unit (119 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF S.EPIDERMIDIS ADHESIN SDRG BINDING TO FIBRINOGEN (ADHESIN-LIGAND COMPLEX)
Authors
:
K. Ponnuraj, M. G. Bowden, S. Davis, S. Gurusiddappa, D. Moore, D. Choe, Y. Xu, M. Hook, S. V. L. Narayana
Date
:
23 Sep 03 (Deposition) - 28 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Sdrg, Mscramm-Ligand Complex, Sdrg-Fibrinopeptide Complex, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Ponnuraj, M. G. Bowden, S. Davis, S. Gurusiddappa, D. Moore, D. Choe, Y. Xu, M. Hook, S. V. L. Narayana
A "Dock, Lock And Latch" Structural Model For A Staphylococcal Adhesin Binding To Fibrinogen
Cell(Cambridge, Mass. ) V. 115 217 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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Sites
(1, 1)
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1: AC2 (SOFTWARE)
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Name
Evidence
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Description
1
AC2
SOFTWARE
GLU A:292 , SER A:297 , ILE A:300 , GLU A:307 , HOH A:673
BINDING SITE FOR RESIDUE CA A 599
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Exons
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1r17a1 (A:276-424)
1b: SCOP_d1r17a2 (A:425-596)
1c: SCOP_d1r17b1 (B:276-424)
1d: SCOP_d1r17b2 (B:425-595)
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Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Fibrinogen-binding domain
(4)
Protein domain
:
Fibrinogen-binding adhesin SdrG
(3)
Staphylococcus epidermidis [TaxId: 1282]
(3)
1a
d1r17a1
A:276-424
1b
d1r17a2
A:425-596
1c
d1r17b1
B:276-424
1d
d1r17b2
B:425-595
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1r17B01 (B:276-424,B:583-595)
1b: CATH_1r17A01 (A:276-424,A:583-596)
2a: CATH_1r17A02 (A:425-582)
2b: CATH_1r17B02 (B:425-582)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1280, no name defined]
(4)
Staphylococcus epidermidis. Organism_taxid: 1282.
(3)
1a
1r17B01
B:276-424,B:583-595
1b
1r17A01
A:276-424,A:583-596
Homologous Superfamily
:
[code=2.60.40.1290, no name defined]
(4)
Staphylococcus epidermidis. Organism_taxid: 1282.
(3)
2a
1r17A02
A:425-582
2b
1r17B02
B:425-582
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_SdrG_C_C_1r17B01 (B:425-583)
1b: PFAM_SdrG_C_C_1r17B02 (B:425-583)
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Clan
:
no clan defined [family: SdrG_C_C]
(5)
Family
:
SdrG_C_C
(5)
Staphylococcus epidermidis
(3)
1a
SdrG_C_C-1r17B01
B:425-583
1b
SdrG_C_C-1r17B02
B:425-583
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Asym.Unit (119 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
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