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1R14
Asym. Unit
Info
Asym.Unit (29 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
CARBOHYDRATE RECOGNITION AND NECK DOMAINS OF SURFACTANT PROTEIN A (SP-A) CONTAINING SAMARIUM
Authors
:
J. F. Head, T. R. Mealy, F. X. Mccormack, B. A. Seaton
Date
:
23 Sep 03 (Deposition) - 11 Nov 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Crd, Alpha Helical Neck Region, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. F. Head, T. R. Mealy, F. X. Mccormack, B. A. Seaton
Crystal Structure Of Trimeric Carbohydrate Recognition And Neck Domains Of Surfactant Protein A
J. Biol. Chem. V. 278 43254 2003
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2a: SAMARIUM (III) ION (SMa)
2b: SAMARIUM (III) ION (SMb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2
SM
2
Ligand/Ion
SAMARIUM (III) ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:195 , ARG A:197 , GLU A:202 , ASN A:214 , ASP A:215 , HOH A:405
BINDING SITE FOR RESIDUE SM A 300
2
AC2
SOFTWARE
GLU A:171 , LYS A:201
BINDING SITE FOR RESIDUE SM A 301
3
AC3
SOFTWARE
ASN A:162 , ASN A:163 , TYR A:164 , THR A:189 , THR A:209 , HOH A:406
BINDING SITE FOR RESIDUE MES A 700
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:114-227)
2: C_TYPE_LECTIN_1 (A:204-226)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
SFTPA_RAT
134-247
1
A:114-227
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
SFTPA_RAT
224-246
1
A:204-226
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Exons
(2, 2)
Info
All Exons
Exon 1.4 (A:84-104)
Exon 1.5 (A:104-228)
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000047870
1
ENSRNOE00000343643
chr16:
17570887-17570917
31
SFTPA_RAT
-
0
0
-
-
1.2
ENSRNOT00000047870
2
ENSRNOE00000317514
chr16:
17571511-17571707
197
SFTPA_RAT
1-58
58
0
-
-
1.3
ENSRNOT00000047870
3
ENSRNOE00000108375
chr16:
17571895-17572014
120
SFTPA_RAT
58-98
41
0
-
-
1.4
ENSRNOT00000047870
4
ENSRNOE00000108787
chr16:
17572890-17572967
78
SFTPA_RAT
98-124
27
1
A:84-104
21
1.5
ENSRNOT00000047870
5
ENSRNOE00000109185
chr16:
17573209-17574389
1181
SFTPA_RAT
124-248
125
1
A:104-228
125
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1r14a1 (A:110-228)
2a: SCOP_d1r14a2 (A:84-109)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Surfactant protein, lectin domain
(16)
Norway rat (Rattus norvegicus), SP-A [TaxId: 10116]
(6)
1a
d1r14a1
A:110-228
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Triple coiled coil domain of C-type lectins
(54)
Family
:
Triple coiled coil domain of C-type lectins
(54)
Protein domain
:
Surfactant protein
(30)
Norway rat (Rattus norvegicus), SP-A [TaxId: 10116]
(6)
2a
d1r14a2
A:84-109
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1r14A00 (A:84-228)
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)
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)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Norway rat (Rattus norvegicus)
(32)
1a
1r14A00
A:84-228
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Lectin_C_1r14A01 (A:124-228)
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Clans
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Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Rattus norvegicus (Rat)
(33)
1a
Lectin_C-1r14A01
A:124-228
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Chain A
Asymmetric Unit 1
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