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1R0Y
Biol. Unit 6
Info
Asym.Unit (187 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (48 KB)
Biol.Unit 5 (358 KB)
Biol.Unit 6 (354 KB)
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(1)
Title
:
CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR (CFTR) NUCLEOTIDE-BINDING DOMAIN ONE (NBD1) WITH ADP
Authors
:
H. A. Lewis, S. G. Buchanan, S. K. Burley, K. Conners, M. Dickey, M. Dorwa R. Fowler, X. Gao, W. B. Guggino, W. A. Hendrickson
Date
:
23 Sep 03 (Deposition) - 09 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (4x)
Biol. Unit 6: C,D (4x)
Keywords
:
Abc Transporter Nucleotide Binding Domain, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. A. Lewis, S. G. Buchanan, S. K. Burley, K. Conners, M. Dickey, M. Dorwart, R. Fowler, X. Gao, W. B. Guggino, W. A. Hendrickson, J. F. Hunt, M. C. Kearins, D. Lorimer, P. C. Maloney, K. W. Post, K. R. Rajashankar, M. E. Rutter, J. M. Sauder, S. Shriver, P. H. Thibodeau, P. J. Thomas, M. Zhang, X. Zhao, S. Emtage
Structure Of Nucleotide-Binding Domain 1 Of The Cystic Fibrosis Transmembrane Conductance Regulator.
Embo J. V. 23 282 2004
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
2d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
12
Ligand/Ion
ACETIC ACID
2
ADP
8
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
[
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Sites
(5, 5)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
TRP C:401 , GLN C:413 , PHE C:430 , VAL C:440 , GLY C:461 , SER C:462 , GLY C:463 , LYS C:464 , THR C:465 , SER C:466 , MET C:498
BINDING SITE FOR RESIDUE ADP C 9
2
AC4
SOFTWARE
HOH D:318 , HOH D:321 , TRP D:401 , LEU D:409 , GLY D:461 , SER D:462 , GLY D:463 , LYS D:464 , THR D:465 , SER D:466
BINDING SITE FOR RESIDUE ADP D 10
3
AC7
SOFTWARE
HOH C:197 , LEU C:541 , GLY C:542 , GLY C:545 , VAL C:546 , THR C:547 , LEU D:578
BINDING SITE FOR RESIDUE ACY C 3
4
AC8
SOFTWARE
HOH D:308 , LEU D:541 , GLY D:542 , GLY D:545 , VAL D:546 , THR D:547
BINDING SITE FOR RESIDUE ACY D 4
5
AC9
SOFTWARE
LYS C:532 , SER C:549 , HOH D:281 , LYS D:532 , GLN D:552
BINDING SITE FOR RESIDUE ACY D 5
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: ABC_TRANSPORTER_1 (C:548-562,D:548-562)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
CFTR_MOUSE
548-562
8
-
-
C:548-562
D:548-562
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1r0ya_ (A:)
1b: SCOP_d1r0yb_ (B:)
1c: SCOP_d1r0yc_ (C:)
1d: SCOP_d1r0yd_ (D:)
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(
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
(17)
Mouse (Mus musculus) [TaxId: 10090]
(9)
1a
d1r0ya_
A:
1b
d1r0yb_
B:
1c
d1r0yc_
C:
1d
d1r0yd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1r0yD00 (D:390-670)
1b: CATH_1r0yA00 (A:390-670)
1c: CATH_1r0yB00 (B:389-670)
1d: CATH_1r0yC00 (C:388-670)
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)
(
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)
(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse (Mus musculus)
(47)
1a
1r0yD00
D:390-670
1b
1r0yA00
A:390-670
1c
1r0yB00
B:389-670
1d
1r0yC00
C:388-670
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_ABC_tran_1r0yD01 (D:465-576)
1b: PFAM_ABC_tran_1r0yD02 (D:465-576)
1c: PFAM_ABC_tran_1r0yD03 (D:465-576)
1d: PFAM_ABC_tran_1r0yD04 (D:465-576)
2a: PFAM_CFTR_R_1r0yD05 (D:639-670)
2b: PFAM_CFTR_R_1r0yD06 (D:639-670)
2c: PFAM_CFTR_R_1r0yD07 (D:639-670)
2d: PFAM_CFTR_R_1r0yD08 (D:639-670)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Mus musculus (Mouse)
(8)
1a
ABC_tran-1r0yD01
D:465-576
1b
ABC_tran-1r0yD02
D:465-576
1c
ABC_tran-1r0yD03
D:465-576
1d
ABC_tran-1r0yD04
D:465-576
Clan
:
no clan defined [family: CFTR_R]
(12)
Family
:
CFTR_R
(12)
Mus musculus (Mouse)
(8)
2a
CFTR_R-1r0yD05
D:639-670
2b
CFTR_R-1r0yD06
D:639-670
2c
CFTR_R-1r0yD07
D:639-670
2d
CFTR_R-1r0yD08
D:639-670
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (187 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (49 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
Biol.Unit 4 (48 KB)
Header - Biol.Unit 4
Biol.Unit 5 (358 KB)
Header - Biol.Unit 5
Biol.Unit 6 (354 KB)
Header - Biol.Unit 6
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