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1R0Y
Asym. Unit
Info
Asym.Unit (187 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (48 KB)
Biol.Unit 5 (358 KB)
Biol.Unit 6 (354 KB)
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(1)
Title
:
CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR (CFTR) NUCLEOTIDE-BINDING DOMAIN ONE (NBD1) WITH ADP
Authors
:
H. A. Lewis, S. G. Buchanan, S. K. Burley, K. Conners, M. Dickey, M. Dorwa R. Fowler, X. Gao, W. B. Guggino, W. A. Hendrickson
Date
:
23 Sep 03 (Deposition) - 09 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (4x)
Biol. Unit 6: C,D (4x)
Keywords
:
Abc Transporter Nucleotide Binding Domain, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. A. Lewis, S. G. Buchanan, S. K. Burley, K. Conners, M. Dickey, M. Dorwart, R. Fowler, X. Gao, W. B. Guggino, W. A. Hendrickson, J. F. Hunt, M. C. Kearins, D. Lorimer, P. C. Maloney, K. W. Post, K. R. Rajashankar, M. E. Rutter, J. M. Sauder, S. Shriver, P. H. Thibodeau, P. J. Thomas, M. Zhang, X. Zhao, S. Emtage
Structure Of Nucleotide-Binding Domain 1 Of The Cystic Fibrosis Transmembrane Conductance Regulator.
Embo J. V. 23 282 2004
[
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
2d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
6
Ligand/Ion
ACETIC ACID
2
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:125 , TRP A:401 , LEU A:409 , GLU A:410 , GLN A:413 , PHE A:430 , GLY A:461 , SER A:462 , GLY A:463 , LYS A:464 , THR A:465 , SER A:466 , MET B:498
BINDING SITE FOR RESIDUE ADP A 7
02
AC2
SOFTWARE
MET A:498 , TRP B:401 , GLN B:413 , PHE B:430 , GLY B:461 , SER B:462 , GLY B:463 , LYS B:464 , THR B:465 , SER B:466
BINDING SITE FOR RESIDUE ADP B 8
03
AC3
SOFTWARE
TRP C:401 , GLN C:413 , PHE C:430 , VAL C:440 , GLY C:461 , SER C:462 , GLY C:463 , LYS C:464 , THR C:465 , SER C:466 , MET C:498
BINDING SITE FOR RESIDUE ADP C 9
04
AC4
SOFTWARE
HOH D:318 , HOH D:321 , TRP D:401 , LEU D:409 , GLY D:461 , SER D:462 , GLY D:463 , LYS D:464 , THR D:465 , SER D:466
BINDING SITE FOR RESIDUE ADP D 10
05
AC5
SOFTWARE
LEU A:541 , GLY A:542 , GLY A:545 , VAL A:546 , THR A:547
BINDING SITE FOR RESIDUE ACY A 1
06
AC6
SOFTWARE
LEU A:578 , HOH B:14 , LEU B:541 , GLY B:542 , GLY B:545 , VAL B:546 , THR B:547
BINDING SITE FOR RESIDUE ACY B 2
07
AC7
SOFTWARE
HOH C:197 , LEU C:541 , GLY C:542 , GLY C:545 , VAL C:546 , THR C:547 , LEU D:578
BINDING SITE FOR RESIDUE ACY C 3
08
AC8
SOFTWARE
HOH D:308 , LEU D:541 , GLY D:542 , GLY D:545 , VAL D:546 , THR D:547
BINDING SITE FOR RESIDUE ACY D 4
09
AC9
SOFTWARE
LYS C:532 , SER C:549 , HOH D:281 , LYS D:532 , GLN D:552
BINDING SITE FOR RESIDUE ACY D 5
10
BC1
SOFTWARE
HOH A:34 , SER A:549 , LYS B:532 , GLN B:552
BINDING SITE FOR RESIDUE ACY A 6
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ABC_TRANSPORTER_1 (A:548-562,B:548-562,C:548-562,D:54...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
CFTR_MOUSE
548-562
4
A:548-562
B:548-562
C:548-562
D:548-562
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1r0ya_ (A:)
1b: SCOP_d1r0yb_ (B:)
1c: SCOP_d1r0yc_ (C:)
1d: SCOP_d1r0yd_ (D:)
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)
(
)
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(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
(17)
Mouse (Mus musculus) [TaxId: 10090]
(9)
1a
d1r0ya_
A:
1b
d1r0yb_
B:
1c
d1r0yc_
C:
1d
d1r0yd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1r0yD00 (D:390-670)
1b: CATH_1r0yA00 (A:390-670)
1c: CATH_1r0yB00 (B:389-670)
1d: CATH_1r0yC00 (C:388-670)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse (Mus musculus)
(47)
1a
1r0yD00
D:390-670
1b
1r0yA00
A:390-670
1c
1r0yB00
B:389-670
1d
1r0yC00
C:388-670
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_ABC_tran_1r0yD01 (D:465-576)
1b: PFAM_ABC_tran_1r0yD02 (D:465-576)
1c: PFAM_ABC_tran_1r0yD03 (D:465-576)
1d: PFAM_ABC_tran_1r0yD04 (D:465-576)
2a: PFAM_CFTR_R_1r0yD05 (D:639-670)
2b: PFAM_CFTR_R_1r0yD06 (D:639-670)
2c: PFAM_CFTR_R_1r0yD07 (D:639-670)
2d: PFAM_CFTR_R_1r0yD08 (D:639-670)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Mus musculus (Mouse)
(8)
1a
ABC_tran-1r0yD01
D:465-576
1b
ABC_tran-1r0yD02
D:465-576
1c
ABC_tran-1r0yD03
D:465-576
1d
ABC_tran-1r0yD04
D:465-576
Clan
:
no clan defined [family: CFTR_R]
(12)
Family
:
CFTR_R
(12)
Mus musculus (Mouse)
(8)
2a
CFTR_R-1r0yD05
D:639-670
2b
CFTR_R-1r0yD06
D:639-670
2c
CFTR_R-1r0yD07
D:639-670
2d
CFTR_R-1r0yD08
D:639-670
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Asymmetric Unit 1
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Asym.Unit (187 KB)
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