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1R0V
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (93 KB)
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(1)
Title
:
STRUCTURE DETERMINATION OF THE DIMERIC ENDONUCLEASE IN A PSEUDO-FACE-CENTERD P21212 SPACE GROUP
Authors
:
H. Li, Y. Zhang
Date
:
23 Sep 03 (Deposition) - 09 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Rna Splicing; Endonuclease; X-Ray Crystallography, Translation, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Y. Zhang, H. Li
Structure Determination Of A Truncated Dimeric Splicing Endonuclease In Pseudo-Face-Centered Space Group P2(1)2(1)2
Acta Crystallogr. , Sect. D V. 60 447 2004
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Hetero Components
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Sites
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1r0va3 (A:140-214)
1b: SCOP_d1r0vb3 (B:140-214)
1c: SCOP_d1r0vc3 (C:140-214)
1d: SCOP_d1r0vd3 (D:140-214)
2a: SCOP_d1r0va1 (A:62-139)
2b: SCOP_d1r0va2 (A:215-305)
2c: SCOP_d1r0vb1 (B:62-139)
2d: SCOP_d1r0vb2 (B:215-305)
2e: SCOP_d1r0vc1 (C:62-139)
2f: SCOP_d1r0vc2 (C:215-305)
2g: SCOP_d1r0vd1 (D:63-139)
2h: SCOP_d1r0vd2 (D:215-305)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MutS N-terminal domain-like
(18)
Superfamily
:
tRNA-intron endonuclease N-terminal domain-like
(5)
Family
:
tRNA-intron endonuclease N-terminal domain-like
(5)
Protein domain
:
Dimeric tRNA splicing endonuclease, domains 1 and 3
(4)
Archaeoglobus fulgidus [TaxId: 2234]
(4)
1a
d1r0va3
A:140-214
1b
d1r0vb3
B:140-214
1c
d1r0vc3
C:140-214
1d
d1r0vd3
D:140-214
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Restriction endonuclease-like
(209)
Superfamily
:
tRNA-intron endonuclease catalytic domain-like
(6)
Family
:
tRNA-intron endonuclease catalytic domain-like
(6)
Protein domain
:
Dimeric tRNA splicing endonuclease, domains 2 and 4
(4)
Archaeoglobus fulgidus [TaxId: 2234]
(4)
2a
d1r0va1
A:62-139
2b
d1r0va2
A:215-305
2c
d1r0vb1
B:62-139
2d
d1r0vb2
B:215-305
2e
d1r0vc1
C:62-139
2f
d1r0vc2
C:215-305
2g
d1r0vd1
D:63-139
2h
d1r0vd2
D:215-305
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1r0vA02 (A:139-213)
1b: CATH_1r0vB02 (B:139-213)
1c: CATH_1r0vC02 (C:139-213)
1d: CATH_1r0vD02 (D:139-213)
2a: CATH_1r0vA03 (A:214-305)
2b: CATH_1r0vB03 (B:214-305)
2c: CATH_1r0vC03 (C:214-305)
2d: CATH_1r0vD03 (D:214-305)
2e: CATH_1r0vA01 (A:62-138)
2f: CATH_1r0vB01 (B:62-138)
2g: CATH_1r0vC01 (C:62-138)
2h: CATH_1r0vD01 (D:63-138)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
MutS, DNA mismatch repair protein, domain I
(15)
Homologous Superfamily
:
[code=3.40.1170.20, no name defined]
(2)
Archaeoglobus fulgidus dsm 4304. Organism_taxid: 224325. Strain: dsm 4304.
(1)
1a
1r0vA02
A:139-213
1b
1r0vB02
B:139-213
1c
1r0vC02
C:139-213
1d
1r0vD02
D:139-213
Topology
:
Trna Endonuclease; Chain: A, domain 1
(24)
Homologous Superfamily
:
[code=3.40.1350.10, no name defined]
(24)
Archaeoglobus fulgidus dsm 4304. Organism_taxid: 224325. Strain: dsm 4304.
(1)
2a
1r0vA03
A:214-305
2b
1r0vB03
B:214-305
2c
1r0vC03
C:214-305
2d
1r0vD03
D:214-305
2e
1r0vA01
A:62-138
2f
1r0vB01
B:62-138
2g
1r0vC01
C:62-138
2h
1r0vD01
D:63-138
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_tRNA_int_endo_1r0vD01 (D:216-299)
1b: PFAM_tRNA_int_endo_1r0vD02 (D:216-299)
1c: PFAM_tRNA_int_endo_1r0vD03 (D:216-299)
1d: PFAM_tRNA_int_endo_1r0vD04 (D:216-299)
2a: PFAM_tRNA_int_endo_N_1r0vD05 (D:149-209)
2b: PFAM_tRNA_int_endo_N_1r0vD06 (D:149-209)
2c: PFAM_tRNA_int_endo_N_1r0vD07 (D:149-209)
2d: PFAM_tRNA_int_endo_N_1r0vD08 (D:149-209)
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Clan
:
tRNA-IECD
(4)
Family
:
tRNA_int_endo
(4)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(2)
1a
tRNA_int_endo-1r0vD01
D:216-299
1b
tRNA_int_endo-1r0vD02
D:216-299
1c
tRNA_int_endo-1r0vD03
D:216-299
1d
tRNA_int_endo-1r0vD04
D:216-299
Clan
:
tRNA-IECD_N
(2)
Family
:
tRNA_int_endo_N
(2)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(2)
2a
tRNA_int_endo_N-1r0vD05
D:149-209
2b
tRNA_int_endo_N-1r0vD06
D:149-209
2c
tRNA_int_endo_N-1r0vD07
D:149-209
2d
tRNA_int_endo_N-1r0vD08
D:149-209
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Asym.Unit (190 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
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