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1QZW
Asym. Unit
Info
Asym.Unit (309 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (79 KB)
Biol.Unit 3 (78 KB)
Biol.Unit 4 (79 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLETE CORE OF ARCHAEAL SRP AND IMPLICATIONS FOR INTER-DOMAIN COMMUNICATION
Authors
:
K. R. Rosendal, K. Wild, G. Montoya, I. Sinning
Date
:
18 Sep 03 (Deposition) - 18 Nov 03 (Release) - 22 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Signal Recognition Particle, Srp, Ribonucleoprotein Complex, Protein- Rna Complex, Protein Targeting, Signaling Protein-Rna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. R. Rosendal, K. Wild, G. Montoya, I. Sinning
Crystal Structure Of The Complete Core Of Archaeal Signal Recognition Particle And Implications For Interdomain Communication
Proc. Natl. Acad. Sci. Usa V. 100 14701 2003
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCa)
1b: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCb)
1c: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCc)
1d: CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC... (CCCd)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
2c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
2d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
View:
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No.
Name
Count
Type
Full Name
1
CCC
4
Mod. Nucleotide
CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2
GTP
4
Mod. Nucleotide
GUANOSINE-5'-TRIPHOSPHATE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1qzwa1 (A:1-87)
1b: SCOP_d1qzwc1 (C:1-87)
1c: SCOP_d1qzwe1 (E:1-87)
1d: SCOP_d1qzwg1 (G:1-87)
2a: SCOP_d1qzwa2 (A:295-432)
2b: SCOP_d1qzwc2 (C:295-432)
2c: SCOP_d1qzwe2 (E:295-432)
2d: SCOP_d1qzwg2 (G:295-432)
3a: SCOP_d1qzwa3 (A:88-294)
3b: SCOP_d1qzwc3 (C:88-294)
3c: SCOP_d1qzwe3 (E:88-294)
3d: SCOP_d1qzwg3 (G:88-294)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Domain of the SRP/SRP receptor G-proteins
(34)
Family
:
Domain of the SRP/SRP receptor G-proteins
(29)
Protein domain
:
Signal sequence recognition protein Ffh
(21)
Sulfolobus solfataricus [TaxId: 2287]
(2)
1a
d1qzwa1
A:1-87
1b
d1qzwc1
C:1-87
1c
d1qzwe1
E:1-87
1d
d1qzwg1
G:1-87
Fold
:
Signal peptide-binding domain
(20)
Superfamily
:
Signal peptide-binding domain
(20)
Family
:
Signal peptide-binding domain
(20)
Protein domain
:
Signal sequence binding protein Ffh
(17)
Sulfolobus solfataricus [TaxId: 2287]
(2)
2a
d1qzwa2
A:295-432
2b
d1qzwc2
C:295-432
2c
d1qzwe2
E:295-432
2d
d1qzwg2
G:295-432
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
GTPase domain of the signal sequence recognition protein Ffh
(21)
Sulfolobus solfataricus [TaxId: 2287]
(2)
3a
d1qzwa3
A:88-294
3b
d1qzwc3
C:88-294
3c
d1qzwe3
E:88-294
3d
d1qzwg3
G:88-294
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CATH Domains
(0, 0)
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_SRP54_1qzwG01 (G:96-293)
1b: PFAM_SRP54_1qzwG02 (G:96-293)
1c: PFAM_SRP54_1qzwG03 (G:96-293)
1d: PFAM_SRP54_1qzwG04 (G:96-293)
2a: PFAM_SRP54_N_1qzwG05 (G:2-78)
2b: PFAM_SRP54_N_1qzwG06 (G:2-78)
2c: PFAM_SRP54_N_1qzwG07 (G:2-78)
2d: PFAM_SRP54_N_1qzwG08 (G:2-78)
3a: PFAM_SRP_SPB_1qzwG09 (G:326-428)
3b: PFAM_SRP_SPB_1qzwG10 (G:326-428)
3c: PFAM_SRP_SPB_1qzwG11 (G:326-428)
3d: PFAM_SRP_SPB_1qzwG12 (G:326-428)
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Clans
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Organisms
(
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Clan
:
P-loop_NTPase
(1112)
Family
:
SRP54
(20)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(2)
1a
SRP54-1qzwG01
G:96-293
1b
SRP54-1qzwG02
G:96-293
1c
SRP54-1qzwG03
G:96-293
1d
SRP54-1qzwG04
G:96-293
Clan
:
no clan defined [family: SRP54_N]
(20)
Family
:
SRP54_N
(20)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(2)
2a
SRP54_N-1qzwG05
G:2-78
2b
SRP54_N-1qzwG06
G:2-78
2c
SRP54_N-1qzwG07
G:2-78
2d
SRP54_N-1qzwG08
G:2-78
Clan
:
no clan defined [family: SRP_SPB]
(20)
Family
:
SRP_SPB
(20)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(2)
3a
SRP_SPB-1qzwG09
G:326-428
3b
SRP_SPB-1qzwG10
G:326-428
3c
SRP_SPB-1qzwG11
G:326-428
3d
SRP_SPB-1qzwG12
G:326-428
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Asym.Unit (309 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (79 KB)
Header - Biol.Unit 2
Biol.Unit 3 (78 KB)
Header - Biol.Unit 3
Biol.Unit 4 (79 KB)
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