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1QZU
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (66 KB)
Biol.Unit 3 (24 KB)
Biol.Unit 4 (65 KB)
Biol.Unit 5 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE
Authors
:
N. Manoj, S. E. Ealick
Date
:
17 Sep 03 (Deposition) - 23 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.91
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (3x)
Biol. Unit 5: C (3x)
Keywords
:
Alpha-Beta Sandwich, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Manoj, S. E. Ealick
Unusual Space-Group Pseudosymmetry In Crystals Of Human Phosphopantothenoylcysteine Decarboxylase.
Acta Crystallogr. , Sect. D V. 59 1762 2003
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
1c: FLAVIN MONONUCLEOTIDE (FMNc)
1d: FLAVIN MONONUCLEOTIDE (FMNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMN
4
Ligand/Ion
FLAVIN MONONUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:25 , GLY A:26 , SER A:27 , VAL A:28 , THR A:53 , PHE A:59 , GLU A:75 , TRP A:76 , TRP A:79 , ASP A:104 , ALA A:105 , ASN A:106 , THR A:107 , CYS A:116 , ALA A:138 , MET A:139 , MET A:143
BINDING SITE FOR RESIDUE FMN A 801
2
AC2
SOFTWARE
THR B:25 , GLY B:26 , SER B:27 , VAL B:28 , THR B:53 , GLU B:75 , TRP B:76 , TRP B:79 , ASP B:104 , ALA B:105 , ASN B:106 , THR B:107 , CYS B:116 , ALA B:138 , MET B:139 , MET B:143
BINDING SITE FOR RESIDUE FMN B 802
3
AC3
SOFTWARE
GLY C:26 , SER C:27 , VAL C:28 , THR C:53 , GLU C:75 , TRP C:76 , TRP C:79 , HIS C:88 , ASP C:104 , ALA C:105 , ASN C:106 , THR C:107 , CYS C:116 , ASP C:117 , ALA C:138 , MET C:139 , MET C:143
BINDING SITE FOR RESIDUE FMN C 803
4
AC4
SOFTWARE
THR D:25 , GLY D:26 , SER D:27 , VAL D:28 , THR D:53 , GLU D:75 , TRP D:76 , TRP D:79 , ASP D:104 , ALA D:105 , ASN D:106 , THR D:107 , CYS D:116 , ALA D:138 , MET D:139 , MET D:143
BINDING SITE FOR RESIDUE FMN D 804
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_068974 (M78M, chain A/B/C/D, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_068974
I
78
M
COAC_HUMAN
Polymorphism
2304899
A/B/C/D
M
78
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(5, 20)
Info
All Exons
Exon 1.2 (A:14-45 (gaps) | B:16-45 (gaps) | ...)
Exon 1.3 (A:46-77 | B:46-77 | C:46-77 | D:46...)
Exon 1.4 (A:78-120 | B:78-120 | C:78-120 | D...)
Exon 1.5 (A:121-165 | B:121-165 | C:121-165 ...)
Exon 1.6 (A:184-194 | B:184-191 | C:184-194 ...)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000342932
1
ENSE00001242936
chr15:
75315896-75315967
72
COAC_HUMAN
-
0
0
-
-
1.2
ENST00000342932
2
ENSE00001045767
chr15:
75320588-75320794
207
COAC_HUMAN
1-45
45
4
A:14-45 (gaps)
B:16-45 (gaps)
C:14-45 (gaps)
D:16-45 (gaps)
32
30
32
30
1.3
ENST00000342932
3
ENSE00001045762
chr15:
75335782-75335877
96
COAC_HUMAN
46-77
32
4
A:46-77
B:46-77
C:46-77
D:46-77
32
32
32
32
1.4
ENST00000342932
4
ENSE00000885757
chr15:
75336727-75336855
129
COAC_HUMAN
78-120
43
4
A:78-120
B:78-120
C:78-120
D:78-120
43
43
43
43
1.5
ENST00000342932
5
ENSE00000575433
chr15:
75340894-75341062
169
COAC_HUMAN
121-177
57
4
A:121-165
B:121-165
C:121-165
D:121-165
45
45
45
45
1.6
ENST00000342932
6
ENSE00001381226
chr15:
75341491-75343067
1577
COAC_HUMAN
177-204
28
4
A:184-194
B:184-191
C:184-194
D:184-191
11
8
11
8
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1qzua_ (A:)
1b: SCOP_d1qzub_ (B:)
1c: SCOP_d1qzuc_ (C:)
1d: SCOP_d1qzud_ (D:)
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Protein Domains
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
(11)
Superfamily
:
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
(11)
Family
:
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
(8)
Protein domain
:
4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1qzua_
A:
1b
d1qzub_
B:
1c
d1qzuc_
C:
1d
d1qzud_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1qzuA00 (A:14-194)
1b: CATH_1qzuC00 (C:14-194)
1c: CATH_1qzuB00 (B:16-191)
1d: CATH_1qzuD00 (D:16-191)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1950, no name defined]
(9)
Human (Homo sapiens)
(1)
1a
1qzuA00
A:14-194
1b
1qzuC00
C:14-194
1c
1qzuB00
B:16-191
1d
1qzuD00
D:16-191
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Flavoprotein_1qzuD01 (D:18-149)
1b: PFAM_Flavoprotein_1qzuD02 (D:18-149)
1c: PFAM_Flavoprotein_1qzuD03 (D:18-149)
1d: PFAM_Flavoprotein_1qzuD04 (D:18-149)
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Clan
:
no clan defined [family: Flavoprotein]
(5)
Family
:
Flavoprotein
(5)
Homo sapiens (Human)
(1)
1a
Flavoprotein-1qzuD01
D:18-149
1b
Flavoprotein-1qzuD02
D:18-149
1c
Flavoprotein-1qzuD03
D:18-149
1d
Flavoprotein-1qzuD04
D:18-149
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Asymmetric Unit 1
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