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1QYG
Asym. Unit
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Asym.Unit (80 KB)
Biol.Unit 1 (75 KB)
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(1)
Title
:
ANTI-COCAINE ANTIBODY M82G2 COMPLEXED WITH BENZOYLECGONINE
Authors
:
E. Pozharski, A. Hewagama, A. Shanafelt, G. Petsko, D. Ringe
Date
:
10 Sep 03 (Deposition) - 23 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.81
Chains
:
Asym. Unit : H,L
Biol. Unit 1: H,L (1x)
Keywords
:
Anti-Cocaine Antibody, Fab, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Pozharski, A. Moulin, A. Hewagama, A. B. Shanafelt, G. A. Petsko, D. Ringe
Diversity In Hapten Recognition: Structural Study Of An Anti-Cocaine Antibody M82G2.
J. Mol. Biol. V. 349 570 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 3-(BENZOYLOXY)-8-METHYL-8-AZABICYC... (BCGa)
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No.
Name
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Type
Full Name
1
BCG
1
Ligand/Ion
3-(BENZOYLOXY)-8-METHYL-8-AZABICYCLO[3.2.1]OCTANE-2-CARBOXYLIC ACID
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP H:31 , TRP H:33 , VAL H:95 , GLN H:97 , LEU H:98 , GLY H:99 , HOH H:402 , HOH H:403 , TYR L:32 , HIS L:91 , LEU L:92 , TYR L:94 , PHE L:96
BINDING SITE FOR RESIDUE BCG H 401
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1qygh2 (H:114-228)
2a: SCOP_d1qygl2 (L:108-213)
3a: SCOP_d1qygh1 (H:1-113)
4a: SCOP_d1qygl1 (L:1-107)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1qygh2
H:114-228
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1qygl2
L:108-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 1 [TaxId: 10090]
(57)
3a
d1qygh1
H:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
(131)
4a
d1qygl1
L:1-107
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1qygL02 (L:109-205)
1b: CATH_1qygL01 (L:1-108)
1c: CATH_1qygH01 (H:1-113)
1d: CATH_1qygH02 (H:114-216)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1qygL02
L:109-205
1b
1qygL01
L:1-108
1c
1qygH01
H:1-113
1d
1qygH02
H:114-216
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Pfam Domains
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