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1QXS
Asym. Unit
Info
Asym.Unit (241 KB)
Biol.Unit 1 (234 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE COMPLEXED WITH AN ANALOGUE OF 1,3-BISPHOSPHO-D-GLYCERIC ACID
Authors
:
M. S. Castilho, F. Pavao, G. Oliva
Date
:
08 Sep 03 (Deposition) - 11 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ggapdh 1, 3-Bpga Analogue Complex, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ladame, M. S. Castilho, C. H. Silva, C. Denier, V. Hannaert, J. Perie, G. Oliva, M. Willson
Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-Phosphate Dehydrogenase Complexed With An Analogue Of 1, 3-Bisphospho-D-Glyceric Acid.
Eur. J. Biochem. V. 270 4574 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
2a: 3-HYDROXY-2-OXO-4-PHOPHONOXY- BUTY... (S70a)
View:
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No.
Name
Count
Type
Full Name
1
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
S70
1
Ligand/Ion
3-HYDROXY-2-OXO-4-PHOPHONOXY- BUTYL)-PHOSPHONIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN C:8 , GLY C:9 , GLY C:11 , ARG C:12 , ILE C:13 , ASP C:38 , MET C:39 , GLN C:91 , SER C:110 , THR C:111 , GLY C:112 , LEU C:113 , SER C:134 , ALA C:135 , CYS C:166 , ALA C:198 , ASN C:335 , TYR C:339 , HOH C:886
BINDING SITE FOR RESIDUE NAD C 860
2
AC2
SOFTWARE
ASN D:8 , GLY D:9 , GLY D:11 , ARG D:12 , ILE D:13 , ASP D:38 , MET D:39 , ALA D:90 , GLN D:91 , SER D:110 , THR D:111 , GLY D:112 , LEU D:113 , SER D:134 , ALA D:135 , CYS D:166 , ALA D:198 , ASN D:335 , TYR D:339 , HOH D:970
BINDING SITE FOR RESIDUE NAD D 861
3
AC3
SOFTWARE
GLY A:9 , GLY A:11 , ARG A:12 , ILE A:13 , VAL A:37 , ASP A:38 , MET A:39 , ALA A:90 , GLN A:91 , SER A:110 , THR A:111 , LEU A:113 , SER A:134 , ALA A:135 , CYS A:166 , ALA A:198 , ASN A:335 , TYR A:339 , S70 A:804 , HOH A:935 , VAL D:206
BINDING SITE FOR RESIDUE NAD A 862
4
AC4
SOFTWARE
GLY B:9 , GLY B:11 , ARG B:12 , ILE B:13 , VAL B:37 , ASP B:38 , MET B:39 , ALA B:90 , GLN B:91 , SER B:110 , GLY B:112 , LEU B:113 , SER B:134 , CYS B:166 , ALA B:198 , ASN B:335 , GLU B:336 , HOH B:963 , HOH B:974 , VAL C:206
BINDING SITE FOR RESIDUE NAD B 863
5
AC5
SOFTWARE
CYS A:166 , THR A:167 , THR A:192 , HIS A:194 , THR A:197 , THR A:199 , THR A:226 , SER A:247 , ARG A:249 , NAD A:862 , HOH A:924 , HOH A:973
BINDING SITE FOR RESIDUE S70 A 804
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GAPDH (A:164-171,B:164-171,C:164-171,D:16...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
G3PG_TRYCR
164-171
4
A:164-171
B:164-171
C:164-171
D:164-171
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1qxsa2 (A:165-333)
1b: SCOP_d1qxsb2 (B:165-333)
1c: SCOP_d1qxsc2 (C:165-333)
1d: SCOP_d1qxsd2 (D:165-333)
2a: SCOP_d1qxsa1 (A:1-164,A:334-359)
2b: SCOP_d1qxsb1 (B:1-164,B:334-359)
2c: SCOP_d1qxsc1 (C:1-164,C:334-359)
2d: SCOP_d1qxsd1 (D:1-164,D:334-359)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Trypanosoma cruzi [TaxId: 5693]
(5)
1a
d1qxsa2
A:165-333
1b
d1qxsb2
B:165-333
1c
d1qxsc2
C:165-333
1d
d1qxsd2
D:165-333
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Trypanosoma cruzi [TaxId: 5693]
(5)
2a
d1qxsa1
A:1-164,A:334-359
2b
d1qxsb1
B:1-164,B:334-359
2c
d1qxsc1
C:1-164,C:334-359
2d
d1qxsd1
D:1-164,D:334-359
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1qxsA02 (A:165-335)
1b: CATH_1qxsC02 (C:165-335)
1c: CATH_1qxsD02 (D:165-335)
1d: CATH_1qxsB02 (B:165-335)
2a: CATH_1qxsA01 (A:2-164,A:336-355)
2b: CATH_1qxsC01 (C:2-164,C:336-355)
2c: CATH_1qxsD01 (D:2-164,D:336-355)
2d: CATH_1qxsB01 (B:2-164,B:336-355)
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(
)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Trypanosoma cruzi. Organism_taxid: 5693.
(3)
1a
1qxsA02
A:165-335
1b
1qxsC02
C:165-335
1c
1qxsD02
D:165-335
1d
1qxsB02
B:165-335
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Trypanosoma cruzi. Organism_taxid: 5693.
(3)
2a
1qxsA01
A:2-164,A:336-355
2b
1qxsC01
C:2-164,C:336-355
2c
1qxsD01
D:2-164,D:336-355
2d
1qxsB01
B:2-164,B:336-355
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (241 KB)
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