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1QX5
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (49 KB)
Biol.Unit 4 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APOCALMODULIN
Authors
:
M. A. Schumacher, M. Crum, M. C. Miller
Date
:
04 Sep 03 (Deposition) - 31 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : B,D,I,J,K,R,T,Y
Biol. Unit 1: D,Y (1x)
Biol. Unit 2: I,R (1x)
Biol. Unit 3: J,T (1x)
Biol. Unit 4: B,K (1x)
Keywords
:
Apocalmodulin, Domain Swap, Dimer, Ef Hands, Calcium Binding Protein, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Schumacher, M. Crum, M. C. Miller
Crystal Structures Of Apocalmodulin And An Apocalmodulin/Sk Potassium Channel Gating Domain Complex.
Structure V. 12 849 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 64)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (B:7-42,D:7-42,I:7-42,J:7-42,K:7-42...)
2: EF_HAND_1 (B:20-32,D:20-32,I:20-32,J:20-32,K:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM3_RAT
8-43
44-79
81-116
117-149
32
B:7-42
D:7-42
I:7-42
J:7-42
K:7-42
R:7-42
T:7-42
Y:7-42
B:43-78
D:43-78
I:43-78
J:43-78
K:43-78
R:43-78
T:43-78
Y:43-78
B:80-115
D:80-115
I:80-115
J:80-115
K:80-115
R:80-115
T:80-115
Y:80-115
B:116-146
D:116-146
I:116-146
J:116-146
K:116-146
R:116-148
T:116-146
Y:116-146
CALM1_RAT
8-43
44-79
81-116
117-149
32
B:7-42
D:7-42
I:7-42
J:7-42
K:7-42
R:7-42
T:7-42
Y:7-42
B:43-78
D:43-78
I:43-78
J:43-78
K:43-78
R:43-78
T:43-78
Y:43-78
B:80-115
D:80-115
I:80-115
J:80-115
K:80-115
R:80-115
T:80-115
Y:80-115
B:116-146
D:116-146
I:116-146
J:116-146
K:116-146
R:116-148
T:116-146
Y:116-146
CALM2_RAT
8-43
44-79
81-116
117-149
32
B:7-42
D:7-42
I:7-42
J:7-42
K:7-42
R:7-42
T:7-42
Y:7-42
B:43-78
D:43-78
I:43-78
J:43-78
K:43-78
R:43-78
T:43-78
Y:43-78
B:80-115
D:80-115
I:80-115
J:80-115
K:80-115
R:80-115
T:80-115
Y:80-115
B:116-146
D:116-146
I:116-146
J:116-146
K:116-146
R:116-148
T:116-146
Y:116-146
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM3_RAT
21-33
57-69
94-106
130-142
32
B:20-32
D:20-32
I:20-32
J:20-32
K:20-32
R:20-32
T:20-32
Y:20-32
B:56-68
D:56-68
I:56-68
J:56-68
K:56-68
R:56-68
T:56-68
Y:56-68
B:93-105
D:93-105
I:93-105
J:93-105
K:93-105
R:93-105
T:93-105
Y:93-105
B:129-141
D:129-141
I:129-141
J:129-141
K:129-141
R:129-141
T:129-141
Y:129-141
CALM1_RAT
21-33
57-69
94-106
130-142
32
B:20-32
D:20-32
I:20-32
J:20-32
K:20-32
R:20-32
T:20-32
Y:20-32
B:56-68
D:56-68
I:56-68
J:56-68
K:56-68
R:56-68
T:56-68
Y:56-68
B:93-105
D:93-105
I:93-105
J:93-105
K:93-105
R:93-105
T:93-105
Y:93-105
B:129-141
D:129-141
I:129-141
J:129-141
K:129-141
R:129-141
T:129-141
Y:129-141
CALM2_RAT
21-33
57-69
94-106
130-142
32
B:20-32
D:20-32
I:20-32
J:20-32
K:20-32
R:20-32
T:20-32
Y:20-32
B:56-68
D:56-68
I:56-68
J:56-68
K:56-68
R:56-68
T:56-68
Y:56-68
B:93-105
D:93-105
I:93-105
J:93-105
K:93-105
R:93-105
T:93-105
Y:93-105
B:129-141
D:129-141
I:129-141
J:129-141
K:129-141
R:129-141
T:129-141
Y:129-141
[
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]
Exons
(5, 40)
Info
All Exons
Exon 1.2 (B:2-11 | D:2-11 | I:2-11 | J:3-11 ...)
Exon 1.3 (B:11-59 | D:11-59 | I:11-59 | J:11...)
Exon 1.4 (B:59-94 | D:59-94 | I:59-94 | J:59...)
Exon 1.5 (B:95-140 | D:95-140 | I:95-140 | J...)
Exon 1.6 (B:140-146 | D:140-146 | I:140-146 ...)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000022603
1
ENSRNOE00000444589
chr1:
77252808-77252705
104
CALM3_RAT
1-1
1
0
-
-
1.2
ENSRNOT00000022603
2
ENSRNOE00000354112
chr1:
77248702-77248672
31
CALM3_RAT
2-12
11
8
B:2-11
D:2-11
I:2-11
J:3-11
K:4-11
R:2-11
T:2-11
Y:2-11
10
10
10
9
8
10
10
10
1.3
ENSRNOT00000022603
3
ENSRNOE00000337344
chr1:
77246477-77246334
144
CALM3_RAT
12-60
49
8
B:11-59
D:11-59
I:11-59
J:11-59
K:11-59
R:11-59
T:11-59
Y:11-59
49
49
49
49
49
49
49
49
1.4
ENSRNOT00000022603
4
ENSRNOE00000316778
chr1:
77246246-77246140
107
CALM3_RAT
60-95
36
8
B:59-94
D:59-94
I:59-94
J:59-94
K:59-94
R:59-94
T:59-94
Y:59-94
36
36
36
36
36
36
36
36
1.5
ENSRNOT00000022603
5
ENSRNOE00000294358
chr1:
77246001-77245866
136
CALM3_RAT
96-141
46
8
B:95-140
D:95-140
I:95-140
J:95-140
K:95-140
R:95-140
T:95-140
Y:95-140
46
46
46
46
46
46
46
46
1.6
ENSRNOT00000022603
6
ENSRNOE00000161097
chr1:
77245776-77245475
302
CALM3_RAT
141-149
9
8
B:140-146
D:140-146
I:140-146
J:140-146
K:140-146
R:140-148
T:140-146
Y:140-146
7
7
7
7
7
9
7
7
1.7
ENSRNOT00000022603
7
ENSRNOE00000437380
chr1:
77244456-77244169
288
CALM3_RAT
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1qx5b_ (B:)
1b: SCOP_d1qx5d_ (D:)
1c: SCOP_d1qx5i_ (I:)
1d: SCOP_d1qx5j_ (J:)
1e: SCOP_d1qx5k_ (K:)
1f: SCOP_d1qx5r_ (R:)
1g: SCOP_d1qx5t_ (T:)
1h: SCOP_d1qx5y_ (Y:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(15)
1a
d1qx5b_
B:
1b
d1qx5d_
D:
1c
d1qx5i_
I:
1d
d1qx5j_
J:
1e
d1qx5k_
K:
1f
d1qx5r_
R:
1g
d1qx5t_
T:
1h
d1qx5y_
Y:
[
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CATH Domains
(1, 9)
Info
all CATH domains
1a: CATH_1qx5K01 (K:4-78)
1b: CATH_1qx5K02 (K:79-146)
1c: CATH_1qx5J00 (J:3-146)
1d: CATH_1qx5B00 (B:2-146)
1e: CATH_1qx5D00 (D:2-146)
1f: CATH_1qx5I00 (I:2-146)
1g: CATH_1qx5T00 (T:2-146)
1h: CATH_1qx5Y00 (Y:2-146)
1i: CATH_1qx5R00 (R:2-148)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Norway rat (Rattus norvegicus)
(37)
1a
1qx5K01
K:4-78
1b
1qx5K02
K:79-146
1c
1qx5J00
J:3-146
1d
1qx5B00
B:2-146
1e
1qx5D00
D:2-146
1f
1qx5I00
I:2-146
1g
1qx5T00
T:2-146
1h
1qx5Y00
Y:2-146
1i
1qx5R00
R:2-148
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (195 KB)
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