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1QVV
Asym. Unit
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Asym.Unit (157 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE S. CEREVISIAE YDR533C PROTEIN
Authors
:
M. Graille, N. Leulliot, S. Quevillon-Cheruel, H. Van Tilbeurgh
Date
:
29 Aug 03 (Deposition) - 30 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Alpha/Beta Hydrolase Fold, Catalytic Triad, Heat Shock Protein, Structural Genomics, Unknown Function
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Graille, S. Quevillon-Cheruel, N. Leulliot, C. Z. Zhou, I. L. De La Sierra Gallay, L. Jacquamet, J. L. Ferrer, D. Liger, A. Poupon, J. Janin, H. Van Tilbeurgh
Crystal Structure Of The Ydr533C S. Cerevisiae Protein, A Class Ii Member Of The Hsp31 Family
Structure V. 12 839 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
1b: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEb)
1c: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEc)
1d: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEd)
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No.
Name
Count
Type
Full Name
1
CME
4
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(1, 4)
Info
All Exons
Exon 1.1 (A:4-237 | B:1-237 | C:3-237 | D:4-...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR533C
1
YDR533C.1
IV:1502153-1501440
714
HSP31_YEAST
1-237
237
4
A:4-237
B:1-237
C:3-237
D:4-237
234
237
235
234
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1qvva_ (A:)
1b: SCOP_d1qvvb_ (B:)
1c: SCOP_d1qvvc_ (C:)
1d: SCOP_d1qvvd_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
DJ-1/PfpI
(54)
Protein domain
:
Hypothetical protein Ydr533Cp
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
1a
d1qvva_
A:
1b
d1qvvb_
B:
1c
d1qvvc_
C:
1d
d1qvvd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1qvvA00 (A:4-237)
1b: CATH_1qvvD00 (D:4-237)
1c: CATH_1qvvC00 (C:3-237)
1d: CATH_1qvvB00 (B:1-237)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Baker's yeast (Saccharomyces cerevisiae)
(8)
1a
1qvvA00
A:4-237
1b
1qvvD00
D:4-237
1c
1qvvC00
C:3-237
1d
1qvvB00
B:1-237
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_DJ_1_PfpI_1qvvD01 (D:62-236)
1b: PFAM_DJ_1_PfpI_1qvvD02 (D:62-236)
1c: PFAM_DJ_1_PfpI_1qvvD03 (D:62-236)
1d: PFAM_DJ_1_PfpI_1qvvD04 (D:62-236)
2a: PFAM_DJ_1_PfpI_N_1qvvD05 (D:4-42)
2b: PFAM_DJ_1_PfpI_N_1qvvD06 (D:4-42)
2c: PFAM_DJ_1_PfpI_N_1qvvD07 (D:4-42)
2d: PFAM_DJ_1_PfpI_N_1qvvD08 (D:4-42)
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Clan
:
Glutaminase_I
(73)
Family
:
DJ-1_PfpI
(29)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(4)
1a
DJ-1_PfpI-1qvvD01
D:62-236
1b
DJ-1_PfpI-1qvvD02
D:62-236
1c
DJ-1_PfpI-1qvvD03
D:62-236
1d
DJ-1_PfpI-1qvvD04
D:62-236
Clan
:
no clan defined [family: DJ-1_PfpI_N]
(3)
Family
:
DJ-1_PfpI_N
(3)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
2a
DJ-1_PfpI_N-1qvvD05
D:4-42
2b
DJ-1_PfpI_N-1qvvD06
D:4-42
2c
DJ-1_PfpI_N-1qvvD07
D:4-42
2d
DJ-1_PfpI_N-1qvvD08
D:4-42
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Asym.Unit (157 KB)
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