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Biol. Unit 3
Info
Asym.Unit (180 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (86 KB)
Biol.Unit 3 (172 KB)
Biol.Unit 4 (88 KB)
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(1)
Title
:
STRUCTURE OF SP4160 BOUND TO IL-2 V69A
Authors
:
C. D. Thanos, W. L. Delano, J. A. Wells
Date
:
28 Aug 03 (Deposition) - 05 Apr 05 (Release) - 09 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Biol. Unit 4: A,C (1x)
Keywords
:
Il-2 Small Molecule Hot Spot, Cytokine
(Keyword Search:
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Reference
:
C. D. Thanos, W. L. Delano, J. A. Wells
Hot-Spot Mimicry Of A Cytokine Receptor By A Small Molecule
Proc. Natl. Acad. Sci. Usa V. 103 15422 2006
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: 2-GUANIDINO-4-METHYL-PENTANOIC ACI... (FRIa)
1b: 2-GUANIDINO-4-METHYL-PENTANOIC ACI... (FRIb)
1c: 2-GUANIDINO-4-METHYL-PENTANOIC ACI... (FRIc)
1d: 2-GUANIDINO-4-METHYL-PENTANOIC ACI... (FRId)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:16 , ASP B:20 , HIS D:16
BINDING SITE FOR RESIDUE ZN B 601
2
AC2
SOFTWARE
HIS A:16 , HIS C:16
BINDING SITE FOR RESIDUE ZN A 701
3
AC3
SOFTWARE
GLU B:68 , GLU B:95
BINDING SITE FOR RESIDUE ZN B 801
4
AC4
SOFTWARE
GLU C:68 , GLU C:95
BINDING SITE FOR RESIDUE ZN C 901
5
AC5
SOFTWARE
PRO A:34 , LYS A:35 , ARG A:38 , MET A:39 , THR A:41 , PHE A:42 , LYS A:43 , TYR A:45 , GLU A:62 , LEU A:72 , ALA A:73 , ASN C:29 , THR C:113 , GLU C:116
BINDING SITE FOR RESIDUE FRI A 201
6
AC6
SOFTWARE
LYS B:35 , ARG B:38 , MET B:39 , THR B:41 , PHE B:42 , LYS B:43 , PHE B:44 , TYR B:45 , GLU B:62 , PRO B:65 , LEU B:72 , ALA B:73 , ASN B:88 , VAL B:91 , LEU B:94 , GLU B:95 , GLU B:100
BINDING SITE FOR RESIDUE FRI B 301
7
AC7
SOFTWARE
LYS C:35 , ARG C:38 , MET C:39 , THR C:41 , PHE C:42 , LYS C:43 , TYR C:45 , GLU C:62 , PRO C:65 , LEU C:72 , ALA C:73 , LEU C:94 , LYS D:64
BINDING SITE FOR RESIDUE FRI C 401
8
AC8
SOFTWARE
ASN B:29 , LEU B:40 , THR B:113 , VAL B:115 , GLU B:116 , PRO D:34 , LYS D:35 , ARG D:38 , MET D:39 , THR D:41 , PHE D:42 , LYS D:43 , TYR D:45 , GLU D:62 , PRO D:65 , LEU D:72
BINDING SITE FOR RESIDUE FRI D 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: INTERLEUKIN_2 (A:51-63,B:51-63,C:51-63,D:51-63)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTERLEUKIN_2
PS00424
Interleukin-2 signature.
IL2_HUMAN
71-83
4
A:51-63
B:51-63
C:51-63
D:51-63
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1qvna_ (A:)
1b: SCOP_d1qvnb_ (B:)
1c: SCOP_d1qvnc_ (C:)
1d: SCOP_d1qvnd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
Interleukin-2 (IL-2)
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1qvna_
A:
1b
d1qvnb_
B:
1c
d1qvnc_
C:
1d
d1qvnd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1qvnA00 (A:4-132)
1b: CATH_1qvnD00 (D:4-132)
1c: CATH_1qvnB00 (B:4-132)
1d: CATH_1qvnC00 (C:4-132)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
1qvnA00
A:4-132
1b
1qvnD00
D:4-132
1c
1qvnB00
B:4-132
1d
1qvnC00
C:4-132
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_IL2_1qvnD01 (D:4-130)
1b: PFAM_IL2_1qvnD02 (D:4-130)
1c: PFAM_IL2_1qvnD03 (D:4-130)
1d: PFAM_IL2_1qvnD04 (D:4-130)
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Clan
:
4H_Cytokine
(48)
Family
:
IL2
(11)
Homo sapiens (Human)
(11)
1a
IL2-1qvnD01
D:4-130
1b
IL2-1qvnD02
D:4-130
1c
IL2-1qvnD03
D:4-130
1d
IL2-1qvnD04
D:4-130
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Show PDB file:
Asym.Unit (180 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (86 KB)
Header - Biol.Unit 2
Biol.Unit 3 (172 KB)
Header - Biol.Unit 3
Biol.Unit 4 (88 KB)
Header - Biol.Unit 4
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