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1QTY
Biol. Unit 3
Info
Asym.Unit (130 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (125 KB)
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(1)
Title
:
VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH DOMAIN 2 OF THE FLT-1 RECEPTOR
Authors
:
C. Wiesmann, A. M. De Vos
Date
:
29 Jun 99 (Deposition) - 12 Jan 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : R,S,T,U,V,W,X,Y
Biol. Unit 1: V,W,X,Y (1x)
Biol. Unit 2: R,S,T,U (1x)
Biol. Unit 3: R,S,T,U,V,W,X,Y (1x)
Keywords
:
Complex (Growth Factor/Receptor), Flt-1, Vegf Receptor, Receptor Tyrosine Kinase, Cystine Knot, Glycoprotein, Immunoglobulin-Like Domain, I-Set, Hormone/Growth Factor Receptor
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. A. Starovasnik, H. W. Christinger, C. Wiesmann, M. A. Champe, A. M. De Vos, N. J. Skelton
Solution Structure Of The Vegf-Binding Domain Of Flt-1: Comparison Of Its Free And Bound States.
J. Mol. Biol. V. 293 531 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_042046 (E144K, chain T/U/X/Y, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042046
E
144
K
VGFR1_HUMAN
Polymorphism
55974987
T/U/X/Y
E
144
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: PDGF_2 (R:13-107,S:13-108,V:13-107,W:13-10...)
2: PDGF_1 (R:49-61,S:49-61,V:49-61,W:49-61)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDGF_2
PS50278
Platelet-derived growth factor (PDGF) family profile.
VEGFA_HUMAN
39-135
4
R:13-107
S:13-108
V:13-107
W:13-107
2
PDGF_1
PS00249
Platelet-derived growth factor (PDGF) family signature.
VEGFA_HUMAN
75-87
4
R:49-61
S:49-61
V:49-61
W:49-61
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1qtyt_ (T:)
1b: SCOP_d1qtyu_ (U:)
1c: SCOP_d1qtyx_ (X:)
1d: SCOP_d1qtyy_ (Y:)
2a: SCOP_d1qtyr_ (R:)
2b: SCOP_d1qtys_ (S:)
2c: SCOP_d1qtyv_ (V:)
2d: SCOP_d1qtyw_ (W:)
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Protein Domains
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)
(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Second domain of the Flt-1 receptor
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1qtyt_
T:
1b
d1qtyu_
U:
1c
d1qtyx_
X:
1d
d1qtyy_
Y:
Class
:
Small proteins
(3458)
Fold
:
Cystine-knot cytokines
(124)
Superfamily
:
Cystine-knot cytokines
(124)
Family
:
Platelet-derived growth factor-like
(26)
Protein domain
:
Vascular endothelial growth factor, VEGF
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
2a
d1qtyr_
R:
2b
d1qtys_
S:
2c
d1qtyv_
V:
2d
d1qtyw_
W:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1qtyS00 (S:13-108)
1b: CATH_1qtyR00 (R:13-107)
1c: CATH_1qtyV00 (V:13-107)
1d: CATH_1qtyW00 (W:13-107)
2a: CATH_1qtyT00 (T:132-225)
2b: CATH_1qtyU00 (U:132-225)
2c: CATH_1qtyX00 (X:132-225)
2d: CATH_1qtyY00 (Y:132-225)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Cystine Knot Cytokines, subunit B
(102)
Homologous Superfamily
:
Cystine-knot cytokines
(102)
Human (Homo sapiens)
(84)
1a
1qtyS00
S:13-108
1b
1qtyR00
R:13-107
1c
1qtyV00
V:13-107
1d
1qtyW00
W:13-107
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1qtyT00
T:132-225
2b
1qtyU00
U:132-225
2c
1qtyX00
X:132-225
2d
1qtyY00
Y:132-225
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_PDGF_1qtyW01 (W:26-104)
1b: PFAM_PDGF_1qtyW02 (W:26-104)
1c: PFAM_PDGF_1qtyW03 (W:26-104)
1d: PFAM_PDGF_1qtyW04 (W:26-104)
2a: PFAM_Ig_2_1qtyY01 (Y:137-225)
2b: PFAM_Ig_2_1qtyY02 (Y:137-225)
2c: PFAM_Ig_2_1qtyY03 (Y:137-225)
2d: PFAM_Ig_2_1qtyY04 (Y:137-225)
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Clan
:
Cystine-knot
(56)
Family
:
PDGF
(19)
Homo sapiens (Human)
(17)
1a
PDGF-1qtyW01
W:26-104
1b
PDGF-1qtyW02
W:26-104
1c
PDGF-1qtyW03
W:26-104
1d
PDGF-1qtyW04
W:26-104
Clan
:
Ig
(577)
Family
:
Ig_2
(52)
Homo sapiens (Human)
(39)
2a
Ig_2-1qtyY01
Y:137-225
2b
Ig_2-1qtyY02
Y:137-225
2c
Ig_2-1qtyY03
Y:137-225
2d
Ig_2-1qtyY04
Y:137-225
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Show PDB file:
Asym.Unit (130 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Biol.Unit 3 (125 KB)
Header - Biol.Unit 3
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