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1QQP
Biol. Unit 1
Info
Asym.Unit (132 KB)
Biol.Unit 1, α-C (7.0 MB)
Biol.Unit 1 (7.0 MB)
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(1)
Title
:
FOOT-AND-MOUTH DISEASE VIRUS/ OLIGOSACCHARIDE RECEPTOR COMPLEX.
Authors
:
E. E. Fry, S. M. Lea, T. Jackson, J. W. I. Newman, F. M. Ellard, W. E. Blakem R. Abu-Ghazaleh, A. Samuel, A. M. Q. King, D. I. Stuart
Date
:
20 May 99 (Deposition) - 18 Jun 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1,2,3,4 (60x)
Keywords
:
Virus, Heparan Sulphate, Virus-Receptor Interactions/Protein- Carbohydrate Interactions, Virus/Viral Protein, Icosahedral Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. E. Fry, S. M. Lea, T. Jackson, J. W. Newman, F. M. Ellard, W. E. Blakemore, R. Abu-Ghazaleh, A. Samuel, A. M. King, D. I. Stuart
The Structure And Function Of A Foot-And-Mouth Disease Virus-Oligosaccharide Receptor Complex.
Embo J. V. 18 543 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 300)
Info
All Hetero Components
1a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
2a: 2-O-SULFO-ALPHA-L-GULOPYRANURONIC ... (IDXa)
2b: 2-O-SULFO-ALPHA-L-GULOPYRANURONIC ... (IDXb)
3a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
3b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IDS
60
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2
IDX
120
Ligand/Ion
2-O-SULFO-ALPHA-L-GULOPYRANURONIC ACID
3
SGN
120
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR 1:197 , SGN 1:702
BINDING SITE FOR RESIDUE IDX 1 701
2
AC2
SOFTWARE
IDX 1:701 , IDS 1:703 , HOH 1:921 , HOH 1:927 , HOH 1:929 , HOH 1:953
BINDING SITE FOR RESIDUE SGN 1 702
3
AC3
SOFTWARE
HIS 1:195 , SGN 1:702 , SGN 1:704 , IDX 1:705 , HOH 1:921 , HOH 1:926 , HOH 1:927 , HOH 1:954 , LYS 2:134
BINDING SITE FOR RESIDUE IDS 1 703
4
AC4
SOFTWARE
HIS 1:195 , IDS 1:703 , IDX 1:705 , HOH 1:919 , HOH 1:920 , HOH 1:931 , HOH 1:954 , HOH 1:955 , LYS 2:134 , ARG 2:135 , TYR 2:138
BINDING SITE FOR RESIDUE SGN 1 704
5
AC5
SOFTWARE
IDS 1:703 , SGN 1:704 , HOH 1:926 , HOH 1:930 , HOH 2:409 , HOH 2:413
BINDING SITE FOR RESIDUE IDX 1 705
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SAPs(SNPs)/Variants
(2, 120)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POLG_FMDVO_001 (V56V, chain 1, )
2: VAR_POLG_FMDVO_002 (G84R, chain 1, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_FMDVO_001
*
I
780
V
POLG_FMDVO
---
---
1
V
56
V
2
UniProt
VAR_POLG_FMDVO_002
*
G
808
R
POLG_FMDVO
---
---
1
G
84
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1qqp_1 (4:,2:)
1b: SCOP_d1qqp1_ (1:)
1c: SCOP_d1qqp3_ (3:)
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Classes
(
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(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Aphthovirus (Foot-and-mouth disease virus) coat proteins
(4)
FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]
(4)
1a
d1qqp.1
4:,2:
1b
d1qqp1_
1:
1c
d1qqp3_
3:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1qqp400 (4:15-85)
2a: CATH_1qqp300 (3:1-220)
2b: CATH_1qqp200 (2:1-218)
2c: CATH_1qqp100 (1:1-210)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Foot-And-Mouth Disease Virus, subunit 4
(9)
Homologous Superfamily
:
Foot-And-Mouth Disease Virus, subunit 4
(9)
Foot-and-mouth disease virus. Organism_taxid: 12110.
(2)
1a
1qqp400
4:15-85
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Foot-and-mouth disease virus. Organism_taxid: 12110.
(2)
2a
1qqp300
3:1-220
2b
1qqp200
2:1-218
2c
1qqp100
1:1-210
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rhv_1qqp301 (3:22-189)
1b: PFAM_Rhv_1qqp302 (3:22-189)
1c: PFAM_Rhv_1qqp303 (3:22-189)
2a: PFAM_VP4_2_1qqp401 (4:15-85)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Viral_ssRNA_CP
(106)
Family
:
Rhv
(55)
Foot-and-mouth disease virus (strain O1) (Aphthovirus O) (FMDV)
(1)
1a
Rhv-1qqp301
3:22-189
1b
Rhv-1qqp302
3:22-189
1c
Rhv-1qqp303
3:22-189
Clan
:
no clan defined [family: VP4_2]
(10)
Family
:
VP4_2
(10)
Foot-and-mouth disease virus (strain O1) (Aphthovirus O) (FMDV)
(1)
2a
VP4_2-1qqp401
4:15-85
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Atom Selection
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Protein
Nucleic
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Protein & NOT Variant
Protein & NOT Site
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Chain 1
Chain 2
Chain 3
Chain 4
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
Asymmetric Unit 9
Asymmetric Unit 10
Asymmetric Unit 11
Asymmetric Unit 12
Asymmetric Unit 13
Asymmetric Unit 14
Asymmetric Unit 15
Asymmetric Unit 16
Asymmetric Unit 17
Asymmetric Unit 18
Asymmetric Unit 19
Asymmetric Unit 20
Asymmetric Unit 21
Asymmetric Unit 22
Asymmetric Unit 23
Asymmetric Unit 24
Asymmetric Unit 25
Asymmetric Unit 26
Asymmetric Unit 27
Asymmetric Unit 28
Asymmetric Unit 29
Asymmetric Unit 30
Asymmetric Unit 31
Asymmetric Unit 32
Asymmetric Unit 33
Asymmetric Unit 34
Asymmetric Unit 35
Asymmetric Unit 36
Asymmetric Unit 37
Asymmetric Unit 38
Asymmetric Unit 39
Asymmetric Unit 40
Asymmetric Unit 41
Asymmetric Unit 42
Asymmetric Unit 43
Asymmetric Unit 44
Asymmetric Unit 45
Asymmetric Unit 46
Asymmetric Unit 47
Asymmetric Unit 48
Asymmetric Unit 49
Asymmetric Unit 50
Asymmetric Unit 51
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Asymmetric Unit 58
Asymmetric Unit 59
Asymmetric Unit 60
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select residue range 5 to 10 in all chains
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Asym.Unit (132 KB)
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