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1QQP
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1, α-C (7.0 MB)
Biol.Unit 1 (7.0 MB)
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(1)
Title
:
FOOT-AND-MOUTH DISEASE VIRUS/ OLIGOSACCHARIDE RECEPTOR COMPLEX.
Authors
:
E. E. Fry, S. M. Lea, T. Jackson, J. W. I. Newman, F. M. Ellard, W. E. Blakem R. Abu-Ghazaleh, A. Samuel, A. M. Q. King, D. I. Stuart
Date
:
20 May 99 (Deposition) - 18 Jun 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1,2,3,4 (60x)
Keywords
:
Virus, Heparan Sulphate, Virus-Receptor Interactions/Protein- Carbohydrate Interactions, Virus/Viral Protein, Icosahedral Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. E. Fry, S. M. Lea, T. Jackson, J. W. Newman, F. M. Ellard, W. E. Blakemore, R. Abu-Ghazaleh, A. Samuel, A. M. King, D. I. Stuart
The Structure And Function Of A Foot-And-Mouth Disease Virus-Oligosaccharide Receptor Complex.
Embo J. V. 18 543 1999
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
2a: 2-O-SULFO-ALPHA-L-GULOPYRANURONIC ... (IDXa)
2b: 2-O-SULFO-ALPHA-L-GULOPYRANURONIC ... (IDXb)
3a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
3b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
IDS
1
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2
IDX
2
Ligand/Ion
2-O-SULFO-ALPHA-L-GULOPYRANURONIC ACID
3
SGN
2
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR 1:197 , SGN 1:702
BINDING SITE FOR RESIDUE IDX 1 701
2
AC2
SOFTWARE
IDX 1:701 , IDS 1:703 , HOH 1:921 , HOH 1:927 , HOH 1:929 , HOH 1:953
BINDING SITE FOR RESIDUE SGN 1 702
3
AC3
SOFTWARE
HIS 1:195 , SGN 1:702 , SGN 1:704 , IDX 1:705 , HOH 1:921 , HOH 1:926 , HOH 1:927 , HOH 1:954 , LYS 2:134
BINDING SITE FOR RESIDUE IDS 1 703
4
AC4
SOFTWARE
HIS 1:195 , IDS 1:703 , IDX 1:705 , HOH 1:919 , HOH 1:920 , HOH 1:931 , HOH 1:954 , HOH 1:955 , LYS 2:134 , ARG 2:135 , TYR 2:138
BINDING SITE FOR RESIDUE SGN 1 704
5
AC5
SOFTWARE
IDS 1:703 , SGN 1:704 , HOH 1:926 , HOH 1:930 , HOH 2:409 , HOH 2:413
BINDING SITE FOR RESIDUE IDX 1 705
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POLG_FMDVO_001 (V56V, chain 1, )
2: VAR_POLG_FMDVO_002 (G84R, chain 1, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_FMDVO_001
*
I
780
V
POLG_FMDVO
---
---
1
V
56
V
2
UniProt
VAR_POLG_FMDVO_002
*
G
808
R
POLG_FMDVO
---
---
1
G
84
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1qqp_1 (4:,2:)
1b: SCOP_d1qqp1_ (1:)
1c: SCOP_d1qqp3_ (3:)
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(
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Folds
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Aphthovirus (Foot-and-mouth disease virus) coat proteins
(4)
FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]
(4)
1a
d1qqp.1
4:,2:
1b
d1qqp1_
1:
1c
d1qqp3_
3:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1qqp400 (4:15-85)
2a: CATH_1qqp300 (3:1-220)
2b: CATH_1qqp200 (2:1-218)
2c: CATH_1qqp100 (1:1-210)
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Classes
(
)
(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Foot-And-Mouth Disease Virus, subunit 4
(9)
Homologous Superfamily
:
Foot-And-Mouth Disease Virus, subunit 4
(9)
Foot-and-mouth disease virus. Organism_taxid: 12110.
(2)
1a
1qqp400
4:15-85
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Foot-and-mouth disease virus. Organism_taxid: 12110.
(2)
2a
1qqp300
3:1-220
2b
1qqp200
2:1-218
2c
1qqp100
1:1-210
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rhv_1qqp301 (3:22-189)
1b: PFAM_Rhv_1qqp302 (3:22-189)
1c: PFAM_Rhv_1qqp303 (3:22-189)
2a: PFAM_VP4_2_1qqp401 (4:15-85)
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Clans
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)
(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Viral_ssRNA_CP
(106)
Family
:
Rhv
(55)
Foot-and-mouth disease virus (strain O1) (Aphthovirus O) (FMDV)
(1)
1a
Rhv-1qqp301
3:22-189
1b
Rhv-1qqp302
3:22-189
1c
Rhv-1qqp303
3:22-189
Clan
:
no clan defined [family: VP4_2]
(10)
Family
:
VP4_2
(10)
Foot-and-mouth disease virus (strain O1) (Aphthovirus O) (FMDV)
(1)
2a
VP4_2-1qqp401
4:15-85
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (132 KB)
Header - Asym.Unit
Biol.Unit 1 (7.0 MB)
Header - Biol.Unit 1
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