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1QOR
Asym. Unit
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Asym.Unit (115 KB)
Biol.Unit 1 (110 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ESCHERICHIA COLI QUINONE OXIDOREDUCTASE COMPLEXED WITH NADPH
Authors
:
J. M. Thorn, J. D. Barton, N. E. Dixon, D. L. Ollis, K. J. Edwards
Date
:
14 Feb 95 (Deposition) - 03 Jun 95 (Release) - 04 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Thorn, J. D. Barton, N. E. Dixon, D. L. Ollis, K. J. Edwards
Crystal Structure Of Escherichia Coli Qor Quinone Oxidoreductase Complexed With Nadph.
J. Mol. Biol. V. 249 785 1995
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
1b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:43 , TYR A:46 , TYR A:52 , PHE A:238 , ASN A:240 , ARG A:263 , NDP A:350 , HOH A:373 , HOH A:481 , HOH B:482
BINDING SITE FOR RESIDUE SO4 A 328
2
AC2
SOFTWARE
ILE B:43 , TYR B:46 , TYR B:52 , ARG B:263 , NDP B:350 , HOH B:355 , HOH B:380
BINDING SITE FOR RESIDUE SO4 B 328
3
AC3
SOFTWARE
PHE A:42 , TYR A:46 , THR A:127 , TYR A:130 , GLY A:151 , GLY A:152 , VAL A:153 , VAL A:172 , GLY A:173 , LYS A:177 , TYR A:192 , SER A:216 , PHE A:238 , GLY A:239 , ASN A:240 , SER A:241 , SER A:242 , ARG A:263 , PRO A:264 , SER A:265 , LEU A:266 , ARG A:317 , SO4 A:328 , HOH A:371 , HOH A:373 , HOH A:403 , HOH A:404 , HOH A:405 , HOH A:413 , HOH A:447 , HOH A:448 , HOH A:466 , HOH A:468 , HOH A:478 , HOH A:480
BINDING SITE FOR RESIDUE NDP A 350
4
AC4
SOFTWARE
PHE B:42 , TYR B:46 , LEU B:123 , THR B:127 , TYR B:130 , GLY B:151 , GLY B:152 , VAL B:153 , VAL B:172 , GLY B:173 , LYS B:177 , TYR B:192 , SER B:216 , PHE B:238 , GLY B:239 , ASN B:240 , SER B:241 , SER B:242 , ARG B:263 , PRO B:264 , SER B:265 , LEU B:266 , ARG B:317 , SO4 B:328 , HOH B:360 , HOH B:365 , HOH B:366 , HOH B:367 , HOH B:377 , HOH B:379 , HOH B:418 , HOH B:422 , HOH B:450 , HOH B:451 , HOH B:463 , HOH B:494 , HOH B:519
BINDING SITE FOR RESIDUE NDP B 350
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: QOR_ZETA_CRYSTAL (A:141-162,B:141-162)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
QOR_ZETA_CRYSTAL
PS01162
Quinone oxidoreductase / zeta-crystallin signature.
QOR1_ECOLI
141-162
2
A:141-162
B:141-162
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1qora1 (A:2-112,A:292-327)
1b: SCOP_d1qorb1 (B:2-112,B:292-327)
2a: SCOP_d1qora2 (A:113-291)
2b: SCOP_d1qorb2 (B:113-291)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Quinone oxidoreductase
(4)
Escherichia coli [TaxId: 562]
(1)
1a
d1qora1
A:2-112,A:292-327
1b
d1qorb1
B:2-112,B:292-327
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Quinone oxidoreductase
(4)
Escherichia coli [TaxId: 562]
(1)
2a
d1qora2
A:113-291
2b
d1qorb2
B:113-291
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1qorA02 (A:124-269)
1b: CATH_1qorB02 (B:124-269)
2a: CATH_1qorA01 (A:2-123,A:270-327)
2b: CATH_1qorB01 (B:2-123,B:270-327)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli. Organism_taxid: 562. Cell_line: 293.
(1)
1a
1qorA02
A:124-269
1b
1qorB02
B:124-269
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Escherichia coli. Organism_taxid: 562. Cell_line: 293.
(1)
2a
1qorA01
A:2-123,A:270-327
2b
1qorB01
B:2-123,B:270-327
[
close CATH info
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_ADH_N_1qorB01 (B:28-97)
1b: PFAM_ADH_N_1qorB02 (B:28-97)
2a: PFAM_ADH_zinc_N_1qorB03 (B:152-285)
2b: PFAM_ADH_zinc_N_1qorB04 (B:152-285)
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)
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)
Clan
:
GroES
(70)
Family
:
ADH_N
(62)
Escherichia coli (strain K12)
(2)
1a
ADH_N-1qorB01
B:28-97
1b
ADH_N-1qorB02
B:28-97
Clan
:
NADP_Rossmann
(1239)
Family
:
ADH_zinc_N
(75)
Escherichia coli (strain K12)
(2)
2a
ADH_zinc_N-1qorB03
B:152-285
2b
ADH_zinc_N-1qorB04
B:152-285
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