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1QOL
Biol. Unit 1
Info
Asym.Unit (228 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (58 KB)
Biol.Unit 4 (58 KB)
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(1)
Title
:
STRUCTURE OF THE FMDV LEADER PROTEASE
Authors
:
A. Guarne, J. Tormo, R. Kirchweger, D. Pfistermueller, T. Skern, I. Fita
Date
:
13 Nov 99 (Deposition) - 10 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,Z
#
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: F,G (1x)
Biol. Unit 4: E,H (1x)
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Hydrolase, Sulfhydryl Proteinase, Picornaviral Proteinase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Guarne, J. Tormo, R. Kirchweger, D. Pfistermueller, I. Fita, T. Skern
Structure Of The Foot-And-Mouth Disease Virus Leader Protease: A Papain-Like Fold Adapted For Self-Processing And Eif4G Recognition.
Embo J. V. 17 7469 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:135 , LEU D:134 , ALA D:135
BINDING SITE FOR RESIDUE CL Z 1
2
AC2
SOFTWARE
ALA B:135 , ALA C:135
BINDING SITE FOR RESIDUE CL Z 2
3
AC4
SOFTWARE
GLU A:76 , ASN A:77 , GLU A:81 , GLU F:76
BINDING SITE FOR RESIDUE EDO A 301
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1qola_ (A:)
1b: SCOP_d1qolh_ (H:)
1c: SCOP_d1qolb_ (B:)
1d: SCOP_d1qolc_ (C:)
1e: SCOP_d1qold_ (D:)
1f: SCOP_d1qole_ (E:)
1g: SCOP_d1qolf_ (F:)
1h: SCOP_d1qolg_ (G:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
FMDV leader protease
(4)
Protein domain
:
FMDV leader protease
(3)
Foot-and-mouth disease virus [TaxId: 12110]
(3)
1a
d1qola_
A:
1b
d1qolh_
H:
1c
d1qolb_
B:
1d
d1qolc_
C:
1e
d1qold_
D:
1f
d1qole_
E:
1g
d1qolf_
F:
1h
d1qolg_
G:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1qolC00 (C:29-201)
1b: CATH_1qolD00 (D:29-201)
1c: CATH_1qolG00 (G:29-201)
1d: CATH_1qolH00 (H:29-201)
1e: CATH_1qolA00 (A:29-201)
1f: CATH_1qolB00 (B:29-201)
1g: CATH_1qolE00 (E:29-201)
1h: CATH_1qolF00 (F:29-201)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Foot-and-mouth disease virus. Organism_taxid: 73482. Strain: o1.
(1)
1a
1qolC00
C:29-201
1b
1qolD00
D:29-201
1c
1qolG00
G:29-201
1d
1qolH00
H:29-201
1e
1qolA00
A:29-201
1f
1qolB00
B:29-201
1g
1qolE00
E:29-201
1h
1qolF00
F:29-201
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Peptidase_C28_1qolH01 (H:29-201)
1b: PFAM_Peptidase_C28_1qolH02 (H:29-201)
1c: PFAM_Peptidase_C28_1qolH03 (H:29-201)
1d: PFAM_Peptidase_C28_1qolH04 (H:29-201)
1e: PFAM_Peptidase_C28_1qolH05 (H:29-201)
1f: PFAM_Peptidase_C28_1qolH06 (H:29-201)
1g: PFAM_Peptidase_C28_1qolH07 (H:29-201)
1h: PFAM_Peptidase_C28_1qolH08 (H:29-201)
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Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C28
(3)
Foot-and-mouth disease virus (strain O1) (Aphthovirus O) (FMDV)
(3)
1a
Peptidase_C28-1qolH01
H:29-201
1b
Peptidase_C28-1qolH02
H:29-201
1c
Peptidase_C28-1qolH03
H:29-201
1d
Peptidase_C28-1qolH04
H:29-201
1e
Peptidase_C28-1qolH05
H:29-201
1f
Peptidase_C28-1qolH06
H:29-201
1g
Peptidase_C28-1qolH07
H:29-201
1h
Peptidase_C28-1qolH08
H:29-201
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (228 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Biol.Unit 2 (59 KB)
Header - Biol.Unit 2
Biol.Unit 3 (58 KB)
Header - Biol.Unit 3
Biol.Unit 4 (58 KB)
Header - Biol.Unit 4
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