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1QO5
Biol. Unit 1
Info
Asym.Unit (1001 KB)
Biol.Unit 1 (230 KB)
Biol.Unit 2 (231 KB)
Biol.Unit 3 (228 KB)
Biol.Unit 4 (230 KB)
Biol.Unit 5 (227 KB)
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(1)
Title
:
FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM HUMAN LIVER TISSUE
Authors
:
A. R. Dalby, J. A. Littlechild
Date
:
03 Nov 99 (Deposition) - 05 Nov 00 (Release) - 01 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S
#
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Biol. Unit 5: Q,R (2x)
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Aldolase, Tim Barrel, Glycolytic Enzyme, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. R. Dalby, D. R. Tolan, J. A. Littlechild
The Structure Of Human Liver Fructose-1, 6- Bisphosphate Aldolase
Acta Crystallogr. , Sect. D V. 57 1526 2001
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC9 (SOFTWARE)
4: SBA (AUTHOR)
5: SBB (AUTHOR)
6: SBC (not defined)
7: SBD (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:271 , GLY A:272 , TYR A:301 , GLY A:302 , ARG A:303 , HOH A:2045 , HOH A:2074 , HOH A:2087
BINDING SITE FOR RESIDUE SO4 A 400
2
AC2
SOFTWARE
LEU D:270 , SER D:271 , GLY D:272 , SER D:300 , GLY D:302 , ARG D:303
BINDING SITE FOR RESIDUE SO4 D 400
3
AC9
SOFTWARE
GLN A:202 , THR A:254 , ARG A:258 , GLN D:9 , LYS D:12
BINDING SITE FOR RESIDUE SO4 S 1
4
SBA
AUTHOR
ARG A:55 , LYS A:146 , LYS A:229 , LYS A:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE SITE
5
SBB
AUTHOR
ARG B:55 , LYS B:146 , LYS B:229 , LYS B:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
6
SBC
not defined
ARG C:55 , LYS C:146 , LYS C:229 , LYS C:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
7
SBD
AUTHOR
ARG D:55 , LYS D:146 , LYS D:229 , LYS D:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
[
close Site info
]
SAPs(SNPs)/Variants
(18, 72)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_020822 (I73T, chain A/B/C/D, )
02: VAR_038429 (R133S, chain A/B/C/D, )
03: VAR_000551 (C134R, chain A/B/C/D, )
04: VAR_000552 (W147R, chain A/B/C/D, )
05: VAR_000553 (A149P, chain A/B/C/D, )
06: VAR_000554 (A174D, chain A/B/C/D, )
07: VAR_058211 (C177R, chain A/B/C/D, )
08: VAR_020824 (P184R, chain A/B/C/D, )
09: VAR_020825 (E206Q, chain A/B/C/D, )
10: VAR_020826 (V221F, chain A/B/C/D, )
11: VAR_020827 (L228P, chain A/B/C/D, )
12: VAR_000555 (L256P, chain A/B/C/D, )
13: VAR_038430 (I267N, chain A/B/C/D, )
14: VAR_058212 (L283P, chain A/B/C/D, )
15: VAR_020828 (R303Q, chain A/B/C/D, )
16: VAR_000556 (R303W, chain A/B/C/D, )
17: VAR_000557 (N334K, chain A/B/C/D, )
18: VAR_000558 (A337V, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_020822
I
74
T
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
I
73
T
02
UniProt
VAR_038429
R
134
S
ALDOB_HUMAN
Polymorphism
10123355
A/B/C/D
R
133
S
03
UniProt
VAR_000551
C
135
R
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
C
134
R
04
UniProt
VAR_000552
W
148
R
ALDOB_HUMAN
Unclassified
---
A/B/C/D
W
147
R
05
UniProt
VAR_000553
A
150
P
ALDOB_HUMAN
Disease (HFI)
1800546
A/B/C/D
A
149
P
06
UniProt
VAR_000554
A
175
D
ALDOB_HUMAN
Disease (HFI)
76917243
A/B/C/D
A
174
D
07
UniProt
VAR_058211
C
178
R
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
C
177
R
08
UniProt
VAR_020824
P
185
R
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
P
184
R
09
UniProt
VAR_020825
E
207
Q
ALDOB_HUMAN
Polymorphism
3739721
A/B/C/D
E
206
Q
10
UniProt
VAR_020826
V
222
F
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
V
221
F
11
UniProt
VAR_020827
L
229
P
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
L
228
P
12
UniProt
VAR_000555
L
257
P
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
L
256
P
13
UniProt
VAR_038430
I
268
N
ALDOB_HUMAN
Polymorphism
10989495
A/B/C/D
I
267
N
14
UniProt
VAR_058212
L
284
P
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
L
283
P
15
UniProt
VAR_020828
R
304
Q
ALDOB_HUMAN
Disease (HFI)
145078268
A/B/C/D
R
303
Q
16
UniProt
VAR_000556
R
304
W
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
R
303
W
17
UniProt
VAR_000557
N
335
K
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
N
334
K
18
UniProt
VAR_000558
A
338
V
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D
A
337
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ALDOLASE_CLASS_I (A:221-231,B:221-231,C:221-231,D:22...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOLASE_CLASS_I
PS00158
Fructose-bisphosphate aldolase class-I active site.
ALDOB_HUMAN
222-232
4
A:221-231
B:221-231
C:221-231
D:221-231
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 18)
Info
All SCOP Domains
1a: SCOP_d1qo5a_ (A:)
1b: SCOP_d1qo5b_ (B:)
1c: SCOP_d1qo5k_ (K:)
1d: SCOP_d1qo5l_ (L:)
1e: SCOP_d1qo5m_ (M:)
1f: SCOP_d1qo5n_ (N:)
1g: SCOP_d1qo5o_ (O:)
1h: SCOP_d1qo5p_ (P:)
1i: SCOP_d1qo5q_ (Q:)
1j: SCOP_d1qo5r_ (R:)
1k: SCOP_d1qo5c_ (C:)
1l: SCOP_d1qo5d_ (D:)
1m: SCOP_d1qo5e_ (E:)
1n: SCOP_d1qo5f_ (F:)
1o: SCOP_d1qo5g_ (G:)
1p: SCOP_d1qo5h_ (H:)
1q: SCOP_d1qo5i_ (I:)
1r: SCOP_d1qo5j_ (J:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
Fructose-1,6-bisphosphate aldolase
(39)
Human (Homo sapiens), liver isozyme [TaxId: 9606]
(2)
1a
d1qo5a_
A:
1b
d1qo5b_
B:
1c
d1qo5k_
K:
1d
d1qo5l_
L:
1e
d1qo5m_
M:
1f
d1qo5n_
N:
1g
d1qo5o_
O:
1h
d1qo5p_
P:
1i
d1qo5q_
Q:
1j
d1qo5r_
R:
1k
d1qo5c_
C:
1l
d1qo5d_
D:
1m
d1qo5e_
E:
1n
d1qo5f_
F:
1o
d1qo5g_
G:
1p
d1qo5h_
H:
1q
d1qo5i_
I:
1r
d1qo5j_
J:
[
close SCOP info
]
CATH Domains
(1, 18)
Info
all CATH domains
1a: CATH_1qo5G00 (G:1-344)
1b: CATH_1qo5I00 (I:1-344)
1c: CATH_1qo5L00 (L:1-344)
1d: CATH_1qo5N00 (N:1-344)
1e: CATH_1qo5O00 (O:1-344)
1f: CATH_1qo5Q00 (Q:1-344)
1g: CATH_1qo5R00 (R:1-344)
1h: CATH_1qo5C00 (C:1-345)
1i: CATH_1qo5B00 (B:1-348)
1j: CATH_1qo5F00 (F:4-356)
1k: CATH_1qo5E00 (E:1-354)
1l: CATH_1qo5K00 (K:4-357)
1m: CATH_1qo5D00 (D:1-356)
1n: CATH_1qo5J00 (J:1-356)
1o: CATH_1qo5H00 (H:1-357)
1p: CATH_1qo5A00 (A:1-360)
1q: CATH_1qo5M00 (M:1-360)
1r: CATH_1qo5P00 (P:1-360)
View:
Select:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
1qo5G00
G:1-344
1b
1qo5I00
I:1-344
1c
1qo5L00
L:1-344
1d
1qo5N00
N:1-344
1e
1qo5O00
O:1-344
1f
1qo5Q00
Q:1-344
1g
1qo5R00
R:1-344
1h
1qo5C00
C:1-345
1i
1qo5B00
B:1-348
1j
1qo5F00
F:4-356
1k
1qo5E00
E:1-354
1l
1qo5K00
K:4-357
1m
1qo5D00
D:1-356
1n
1qo5J00
J:1-356
1o
1qo5H00
H:1-357
1p
1qo5A00
A:1-360
1q
1qo5M00
M:1-360
1r
1qo5P00
P:1-360
[
close CATH info
]
Pfam Domains
(1, 18)
Info
all PFAM domains
1a: PFAM_Glycolytic_1qo5R01 (R:14-344)
1b: PFAM_Glycolytic_1qo5R02 (R:14-344)
1c: PFAM_Glycolytic_1qo5R03 (R:14-344)
1d: PFAM_Glycolytic_1qo5R04 (R:14-344)
1e: PFAM_Glycolytic_1qo5R05 (R:14-344)
1f: PFAM_Glycolytic_1qo5R06 (R:14-344)
1g: PFAM_Glycolytic_1qo5R07 (R:14-344)
1h: PFAM_Glycolytic_1qo5R08 (R:14-344)
1i: PFAM_Glycolytic_1qo5R09 (R:14-344)
1j: PFAM_Glycolytic_1qo5R10 (R:14-344)
1k: PFAM_Glycolytic_1qo5R11 (R:14-344)
1l: PFAM_Glycolytic_1qo5R12 (R:14-344)
1m: PFAM_Glycolytic_1qo5R13 (R:14-344)
1n: PFAM_Glycolytic_1qo5R14 (R:14-344)
1o: PFAM_Glycolytic_1qo5R15 (R:14-344)
1p: PFAM_Glycolytic_1qo5R16 (R:14-344)
1q: PFAM_Glycolytic_1qo5R17 (R:14-344)
1r: PFAM_Glycolytic_1qo5R18 (R:14-344)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Glycolytic]
(21)
Family
:
Glycolytic
(21)
Homo sapiens (Human)
(4)
1a
Glycolytic-1qo5R01
R:14-344
1b
Glycolytic-1qo5R02
R:14-344
1c
Glycolytic-1qo5R03
R:14-344
1d
Glycolytic-1qo5R04
R:14-344
1e
Glycolytic-1qo5R05
R:14-344
1f
Glycolytic-1qo5R06
R:14-344
1g
Glycolytic-1qo5R07
R:14-344
1h
Glycolytic-1qo5R08
R:14-344
1i
Glycolytic-1qo5R09
R:14-344
1j
Glycolytic-1qo5R10
R:14-344
1k
Glycolytic-1qo5R11
R:14-344
1l
Glycolytic-1qo5R12
R:14-344
1m
Glycolytic-1qo5R13
R:14-344
1n
Glycolytic-1qo5R14
R:14-344
1o
Glycolytic-1qo5R15
R:14-344
1p
Glycolytic-1qo5R16
R:14-344
1q
Glycolytic-1qo5R17
R:14-344
1r
Glycolytic-1qo5R18
R:14-344
[
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Asym.Unit (1001 KB)
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Biol.Unit 1 (230 KB)
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