PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1QO5
Asym. Unit
Info
Asym.Unit (1001 KB)
Biol.Unit 1 (230 KB)
Biol.Unit 2 (231 KB)
Biol.Unit 3 (228 KB)
Biol.Unit 4 (230 KB)
Biol.Unit 5 (227 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM HUMAN LIVER TISSUE
Authors
:
A. R. Dalby, J. A. Littlechild
Date
:
03 Nov 99 (Deposition) - 05 Nov 00 (Release) - 01 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S
#
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Biol. Unit 5: Q,R (2x)
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Aldolase, Tim Barrel, Glycolytic Enzyme, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. R. Dalby, D. R. Tolan, J. A. Littlechild
The Structure Of Human Liver Fructose-1, 6- Bisphosphate Aldolase
Acta Crystallogr. , Sect. D V. 57 1526 2001
[
close entry info
]
Hetero Components
(1, 15)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
15
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: SBA (AUTHOR)
17: SBB (AUTHOR)
18: SBC (not defined)
19: SBD (AUTHOR)
20: SBE (AUTHOR)
21: SBF (AUTHOR)
22: SBG (AUTHOR)
23: SBH (AUTHOR)
24: SBI (AUTHOR)
25: SBJ (AUTHOR)
26: SBK (AUTHOR)
27: SBL (AUTHOR)
28: SBM (AUTHOR)
29: SBN (AUTHOR)
30: SBO (AUTHOR)
31: SBP (AUTHOR)
32: SBQ (AUTHOR)
33: SBR (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:271 , GLY A:272 , TYR A:301 , GLY A:302 , ARG A:303 , HOH A:2045 , HOH A:2074 , HOH A:2087
BINDING SITE FOR RESIDUE SO4 A 400
02
AC2
SOFTWARE
LEU D:270 , SER D:271 , GLY D:272 , SER D:300 , GLY D:302 , ARG D:303
BINDING SITE FOR RESIDUE SO4 D 400
03
AC3
SOFTWARE
LYS E:229 , LEU E:270 , SER E:271 , GLY E:272 , TYR E:301 , GLY E:302 , ARG E:303
BINDING SITE FOR RESIDUE SO4 E 400
04
AC4
SOFTWARE
LEU G:270 , SER G:271 , GLY G:272 , GLY G:302 , ARG G:303
BINDING SITE FOR RESIDUE SO4 G 400
05
AC5
SOFTWARE
SER J:271 , GLY J:272 , TYR J:301 , GLY J:302 , ARG J:303
BINDING SITE FOR RESIDUE SO4 J 400
06
AC6
SOFTWARE
LYS K:229 , LEU K:270 , SER K:271 , GLY K:272 , TYR K:301 , GLY K:302 , ARG K:303
BINDING SITE FOR RESIDUE SO4 K 400
07
AC7
SOFTWARE
LYS P:229 , LEU P:270 , SER P:271 , GLY P:272 , GLY P:302 , ARG P:303
BINDING SITE FOR RESIDUE SO4 N 400
08
AC8
SOFTWARE
LYS R:229 , SER R:271 , GLY R:272 , GLY R:302 , ARG R:303
BINDING SITE FOR RESIDUE SO4 R 400
09
AC9
SOFTWARE
GLN A:202 , THR A:254 , ARG A:258 , GLN D:9 , LYS D:12
BINDING SITE FOR RESIDUE SO4 S 1
10
BC1
SOFTWARE
GLN M:202 , THR M:254 , ARG M:258 , HOH M:2070 , GLN P:9
BINDING SITE FOR RESIDUE SO4 S 2
11
BC2
SOFTWARE
GLN F:202 , ARG F:258 , GLN G:9 , LYS G:12
BINDING SITE FOR RESIDUE SO4 S 3
12
BC3
SOFTWARE
LYS N:12 , GLN O:202 , ARG O:258
BINDING SITE FOR RESIDUE SO4 S 4
13
BC4
SOFTWARE
GLN F:9 , LYS F:12 , GLN G:202 , ARG G:258
BINDING SITE FOR RESIDUE SO4 S 5
14
BC5
SOFTWARE
GLN R:9 , LYS R:12 , GLN R:202 , THR R:254 , ARG R:258
BINDING SITE FOR RESIDUE SO4 S 6
15
BC6
SOFTWARE
GLN M:9 , LYS M:12 , GLN P:202 , THR P:254 , ARG P:258 , HOH S:2002
BINDING SITE FOR RESIDUE SO4 S 7
16
SBA
AUTHOR
ARG A:55 , LYS A:146 , LYS A:229 , LYS A:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE SITE
17
SBB
AUTHOR
ARG B:55 , LYS B:146 , LYS B:229 , LYS B:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
18
SBC
not defined
ARG C:55 , LYS C:146 , LYS C:229 , LYS C:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
19
SBD
AUTHOR
ARG D:55 , LYS D:146 , LYS D:229 , LYS D:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
20
SBE
AUTHOR
ARG E:55 , LYS E:146 , LYS E:229 , LYS E:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
21
SBF
AUTHOR
ARG F:55 , LYS F:146 , LYS F:229 , LYS F:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
22
SBG
AUTHOR
ARG G:55 , LYS G:146 , LYS G:229 , LYS G:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
23
SBH
AUTHOR
ARG H:55 , LYS H:146 , LYS H:229 , LYS H:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
24
SBI
AUTHOR
ARG I:55 , LYS I:146 , LYS I:229 , LYS I:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
25
SBJ
AUTHOR
ARG J:55 , LYS J:146 , LYS J:229 , LYS J:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
26
SBK
AUTHOR
ARG K:55 , LYS K:146 , LYS K:229 , LYS K:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
27
SBL
AUTHOR
ARG L:55 , LYS L:146 , LYS L:229 , LYS L:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
28
SBM
AUTHOR
ARG M:55 , LYS M:146 , LYS M:229 , LYS M:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
29
SBN
AUTHOR
ARG N:55 , LYS N:146 , LYS N:229 , LYS N:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
30
SBO
AUTHOR
ARG O:55 , LYS O:146 , LYS O:229 , LYS O:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
31
SBP
AUTHOR
ARG P:55 , LYS P:146 , LYS P:229 , LYS P:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
32
SBQ
AUTHOR
ARG Q:55 , LYS Q:146 , LYS Q:229 , LYS Q:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
33
SBR
AUTHOR
ARG R:55 , LYS R:146 , LYS R:229 , LYS R:229
ACTIVE SITE WITH: ARG 55 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 146 C-1-PHOSPHATE GROUP OF THE SUBSTRATE LYS 229 SCHIFF-BASE WITH DIHYDROXYACETONE-P. TYR 363 ESSENTIAL FOR ENHANCED ACTIVITY OF THE ENZYME TOWARD FRUCTOSE 1,6-BISPHOSPHATE AS COMPARED WITH FRUCTOSE 1-PHOSPHATE
[
close Site info
]
SAPs(SNPs)/Variants
(18, 324)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_020822 (I73T, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
02: VAR_038429 (R133S, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
03: VAR_000551 (C134R, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
04: VAR_000552 (W147R, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
05: VAR_000553 (A149P, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
06: VAR_000554 (A174D, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
07: VAR_058211 (C177R, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
08: VAR_020824 (P184R, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
09: VAR_020825 (E206Q, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
10: VAR_020826 (V221F, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
11: VAR_020827 (L228P, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
12: VAR_000555 (L256P, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
13: VAR_038430 (I267N, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
14: VAR_058212 (L283P, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
15: VAR_020828 (R303Q, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
16: VAR_000556 (R303W, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
17: VAR_000557 (N334K, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
18: VAR_000558 (A337V, chain A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_020822
I
74
T
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
I
73
T
02
UniProt
VAR_038429
R
134
S
ALDOB_HUMAN
Polymorphism
10123355
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
R
133
S
03
UniProt
VAR_000551
C
135
R
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
C
134
R
04
UniProt
VAR_000552
W
148
R
ALDOB_HUMAN
Unclassified
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
W
147
R
05
UniProt
VAR_000553
A
150
P
ALDOB_HUMAN
Disease (HFI)
1800546
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
A
149
P
06
UniProt
VAR_000554
A
175
D
ALDOB_HUMAN
Disease (HFI)
76917243
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
A
174
D
07
UniProt
VAR_058211
C
178
R
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
C
177
R
08
UniProt
VAR_020824
P
185
R
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
P
184
R
09
UniProt
VAR_020825
E
207
Q
ALDOB_HUMAN
Polymorphism
3739721
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
E
206
Q
10
UniProt
VAR_020826
V
222
F
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
V
221
F
11
UniProt
VAR_020827
L
229
P
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
L
228
P
12
UniProt
VAR_000555
L
257
P
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
L
256
P
13
UniProt
VAR_038430
I
268
N
ALDOB_HUMAN
Polymorphism
10989495
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
I
267
N
14
UniProt
VAR_058212
L
284
P
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
L
283
P
15
UniProt
VAR_020828
R
304
Q
ALDOB_HUMAN
Disease (HFI)
145078268
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
R
303
Q
16
UniProt
VAR_000556
R
304
W
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
R
303
W
17
UniProt
VAR_000557
N
335
K
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
N
334
K
18
UniProt
VAR_000558
A
338
V
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R
A
337
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 18)
Info
All PROSITE Patterns/Profiles
1: ALDOLASE_CLASS_I (A:221-231,B:221-231,C:221-231,D:22...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOLASE_CLASS_I
PS00158
Fructose-bisphosphate aldolase class-I active site.
ALDOB_HUMAN
222-232
18
A:221-231
B:221-231
C:221-231
D:221-231
E:221-231
F:221-231
G:221-231
H:221-231
I:221-231
J:221-231
K:221-231
L:221-231
M:221-231
N:221-231
O:221-231
P:221-231
Q:221-231
R:221-231
[
close PROSITE info
]
Exons
(8, 144)
Info
All Exons
Exon 1.2b (A:1-37 | B:1-37 | C:1-37 | D:1-37 ...)
Exon 1.3b (A:37-107 | B:37-107 | C:37-107 | D...)
Exon 1.4 (A:108-126 | B:108-126 | C:108-126 ...)
Exon 1.5 (A:126-179 | B:126-179 | C:126-179 ...)
Exon 1.6 (A:180-207 | B:180-207 | C:180-207 ...)
Exon 1.7b (A:208-266 | B:208-266 | C:208-266 ...)
Exon 1.8b (A:266-332 | B:266-332 | C:266-332 ...)
Exon 1.9a (A:333-360 | B:333-348 | C:333-345 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3b
3: Boundary 1.3b/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7b
7: Boundary 1.7b/1.8b
8: Boundary 1.8b/1.9a
9: Boundary 1.9a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000374855
1a
ENSE00001831927
chr9:
104198105-104197991
115
ALDOB_HUMAN
-
0
0
-
-
1.2b
ENST00000374855
2b
ENSE00002201261
chr9:
104193179-104193058
122
ALDOB_HUMAN
1-38
38
18
A:1-37
B:1-37
C:1-37
D:1-37
E:1-37
F:4-37
G:1-37
H:1-37
I:1-37
J:1-37
K:4-37
L:1-37
M:1-37
N:1-37
O:1-37
P:1-37
Q:1-37
R:1-37
37
37
37
37
37
34
37
37
37
37
34
37
37
37
37
37
37
37
1.3b
ENST00000374855
3b
ENSE00000926603
chr9:
104192248-104192037
212
ALDOB_HUMAN
38-108
71
18
A:37-107
B:37-107
C:37-107
D:37-107
E:37-107
F:37-107
G:37-107
H:37-107
I:37-107
J:37-107
K:37-107
L:37-107
M:37-107
N:37-107
O:37-107
P:37-107
Q:37-107
R:37-107
71
71
71
71
71
71
71
71
71
71
71
71
71
71
71
71
71
71
1.4
ENST00000374855
4
ENSE00000926602
chr9:
104190805-104190751
55
ALDOB_HUMAN
109-127
19
18
A:108-126
B:108-126
C:108-126
D:108-126
E:108-126
F:108-126
G:108-126
H:108-126
I:108-126
J:108-126
K:108-126
L:108-126
M:108-126
N:108-126
O:108-126
P:108-126
Q:108-126
R:108-126
19
19
19
19
19
19
19
19
19
19
19
19
19
19
19
19
19
19
1.5
ENST00000374855
5
ENSE00000926601
chr9:
104189924-104189764
161
ALDOB_HUMAN
127-180
54
18
A:126-179
B:126-179
C:126-179
D:126-179
E:126-179
F:126-179
G:126-179
H:126-179
I:126-179
J:126-179
K:126-179
L:126-179
M:126-179
N:126-179
O:126-179
P:126-179
Q:126-179
R:126-179
54
54
54
54
54
54
54
54
54
54
54
54
54
54
54
54
54
54
1.6
ENST00000374855
6
ENSE00001662738
chr9:
104188920-104188837
84
ALDOB_HUMAN
181-208
28
18
A:180-207
B:180-207
C:180-207
D:180-207
E:180-207
F:180-207
G:180-207
H:180-207
I:180-207
J:180-207
K:180-207
L:180-207
M:180-207
N:180-207
O:180-207
P:180-207
Q:180-207
R:180-207
28
28
28
28
28
28
28
28
28
28
28
28
28
28
28
28
28
28
1.7b
ENST00000374855
7b
ENSE00000926599
chr9:
104187909-104187735
175
ALDOB_HUMAN
209-267
59
18
A:208-266
B:208-266
C:208-266
D:208-266
E:208-266
F:208-266
G:208-266
H:208-266
I:208-266
J:208-266
K:208-266
L:208-266
M:208-266
N:208-266
O:208-266
P:208-266
Q:208-266
R:208-266
59
59
59
59
59
59
59
59
59
59
59
59
59
59
59
59
59
59
1.8b
ENST00000374855
8b
ENSE00000926598
chr9:
104187324-104187125
200
ALDOB_HUMAN
267-333
67
18
A:266-332
B:266-332
C:266-332
D:266-332
E:266-332
F:266-332
G:266-332
H:266-332
I:266-332
J:266-332
K:266-332
L:266-332
M:266-332
N:266-332
O:266-332
P:266-332
Q:266-332
R:266-332
67
67
67
67
67
67
67
67
67
67
67
67
67
67
67
67
67
67
1.9a
ENST00000374855
9a
ENSE00001825604
chr9:
104184186-104182860
1327
ALDOB_HUMAN
334-364
31
18
A:333-360
B:333-348
C:333-345
D:333-356
E:333-354
F:333-356
G:333-344
H:333-357
I:333-344
J:333-356
K:333-357
L:333-344
M:333-360
N:333-344
O:333-344
P:333-360
Q:333-344
R:333-344
28
16
13
24
22
24
12
25
12
24
25
12
28
12
12
28
12
12
[
close EXON info
]
SCOP Domains
(1, 18)
Info
All SCOP Domains
1a: SCOP_d1qo5a_ (A:)
1b: SCOP_d1qo5b_ (B:)
1c: SCOP_d1qo5k_ (K:)
1d: SCOP_d1qo5l_ (L:)
1e: SCOP_d1qo5m_ (M:)
1f: SCOP_d1qo5n_ (N:)
1g: SCOP_d1qo5o_ (O:)
1h: SCOP_d1qo5p_ (P:)
1i: SCOP_d1qo5q_ (Q:)
1j: SCOP_d1qo5r_ (R:)
1k: SCOP_d1qo5c_ (C:)
1l: SCOP_d1qo5d_ (D:)
1m: SCOP_d1qo5e_ (E:)
1n: SCOP_d1qo5f_ (F:)
1o: SCOP_d1qo5g_ (G:)
1p: SCOP_d1qo5h_ (H:)
1q: SCOP_d1qo5i_ (I:)
1r: SCOP_d1qo5j_ (J:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
Fructose-1,6-bisphosphate aldolase
(39)
Human (Homo sapiens), liver isozyme [TaxId: 9606]
(2)
1a
d1qo5a_
A:
1b
d1qo5b_
B:
1c
d1qo5k_
K:
1d
d1qo5l_
L:
1e
d1qo5m_
M:
1f
d1qo5n_
N:
1g
d1qo5o_
O:
1h
d1qo5p_
P:
1i
d1qo5q_
Q:
1j
d1qo5r_
R:
1k
d1qo5c_
C:
1l
d1qo5d_
D:
1m
d1qo5e_
E:
1n
d1qo5f_
F:
1o
d1qo5g_
G:
1p
d1qo5h_
H:
1q
d1qo5i_
I:
1r
d1qo5j_
J:
[
close SCOP info
]
CATH Domains
(1, 18)
Info
all CATH domains
1a: CATH_1qo5G00 (G:1-344)
1b: CATH_1qo5I00 (I:1-344)
1c: CATH_1qo5L00 (L:1-344)
1d: CATH_1qo5N00 (N:1-344)
1e: CATH_1qo5O00 (O:1-344)
1f: CATH_1qo5Q00 (Q:1-344)
1g: CATH_1qo5R00 (R:1-344)
1h: CATH_1qo5C00 (C:1-345)
1i: CATH_1qo5B00 (B:1-348)
1j: CATH_1qo5F00 (F:4-356)
1k: CATH_1qo5E00 (E:1-354)
1l: CATH_1qo5K00 (K:4-357)
1m: CATH_1qo5D00 (D:1-356)
1n: CATH_1qo5J00 (J:1-356)
1o: CATH_1qo5H00 (H:1-357)
1p: CATH_1qo5A00 (A:1-360)
1q: CATH_1qo5M00 (M:1-360)
1r: CATH_1qo5P00 (P:1-360)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
1qo5G00
G:1-344
1b
1qo5I00
I:1-344
1c
1qo5L00
L:1-344
1d
1qo5N00
N:1-344
1e
1qo5O00
O:1-344
1f
1qo5Q00
Q:1-344
1g
1qo5R00
R:1-344
1h
1qo5C00
C:1-345
1i
1qo5B00
B:1-348
1j
1qo5F00
F:4-356
1k
1qo5E00
E:1-354
1l
1qo5K00
K:4-357
1m
1qo5D00
D:1-356
1n
1qo5J00
J:1-356
1o
1qo5H00
H:1-357
1p
1qo5A00
A:1-360
1q
1qo5M00
M:1-360
1r
1qo5P00
P:1-360
[
close CATH info
]
Pfam Domains
(1, 18)
Info
all PFAM domains
1a: PFAM_Glycolytic_1qo5R01 (R:14-344)
1b: PFAM_Glycolytic_1qo5R02 (R:14-344)
1c: PFAM_Glycolytic_1qo5R03 (R:14-344)
1d: PFAM_Glycolytic_1qo5R04 (R:14-344)
1e: PFAM_Glycolytic_1qo5R05 (R:14-344)
1f: PFAM_Glycolytic_1qo5R06 (R:14-344)
1g: PFAM_Glycolytic_1qo5R07 (R:14-344)
1h: PFAM_Glycolytic_1qo5R08 (R:14-344)
1i: PFAM_Glycolytic_1qo5R09 (R:14-344)
1j: PFAM_Glycolytic_1qo5R10 (R:14-344)
1k: PFAM_Glycolytic_1qo5R11 (R:14-344)
1l: PFAM_Glycolytic_1qo5R12 (R:14-344)
1m: PFAM_Glycolytic_1qo5R13 (R:14-344)
1n: PFAM_Glycolytic_1qo5R14 (R:14-344)
1o: PFAM_Glycolytic_1qo5R15 (R:14-344)
1p: PFAM_Glycolytic_1qo5R16 (R:14-344)
1q: PFAM_Glycolytic_1qo5R17 (R:14-344)
1r: PFAM_Glycolytic_1qo5R18 (R:14-344)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Glycolytic]
(21)
Family
:
Glycolytic
(21)
Homo sapiens (Human)
(4)
1a
Glycolytic-1qo5R01
R:14-344
1b
Glycolytic-1qo5R02
R:14-344
1c
Glycolytic-1qo5R03
R:14-344
1d
Glycolytic-1qo5R04
R:14-344
1e
Glycolytic-1qo5R05
R:14-344
1f
Glycolytic-1qo5R06
R:14-344
1g
Glycolytic-1qo5R07
R:14-344
1h
Glycolytic-1qo5R08
R:14-344
1i
Glycolytic-1qo5R09
R:14-344
1j
Glycolytic-1qo5R10
R:14-344
1k
Glycolytic-1qo5R11
R:14-344
1l
Glycolytic-1qo5R12
R:14-344
1m
Glycolytic-1qo5R13
R:14-344
1n
Glycolytic-1qo5R14
R:14-344
1o
Glycolytic-1qo5R15
R:14-344
1p
Glycolytic-1qo5R16
R:14-344
1q
Glycolytic-1qo5R17
R:14-344
1r
Glycolytic-1qo5R18
R:14-344
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1001 KB)
Header - Asym.Unit
Biol.Unit 1 (230 KB)
Header - Biol.Unit 1
Biol.Unit 2 (231 KB)
Header - Biol.Unit 2
Biol.Unit 3 (228 KB)
Header - Biol.Unit 3
Biol.Unit 4 (230 KB)
Header - Biol.Unit 4
Biol.Unit 5 (227 KB)
Header - Biol.Unit 5
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1QO5
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help