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Getting 'Biological Unit' information from database.
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1QO0
Asym. Unit
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Asym.Unit (200 KB)
Biol.Unit 1 (385 KB)
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(1)
Title
:
AMIDE RECEPTOR OF THE AMIDASE OPERON OF PSEUDOMONAS AERUGINOSA (AMIC) COMPLEXED WITH THE POSITIVE REGULATOR AMIR.
Authors
:
L. H. Pearl, B. P. O'Hara, S. M. Roe
Date
:
26 Oct 99 (Deposition) - 23 Dec 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B,D,E (2x)
Keywords
:
Binding Protein, Gene Regulator, Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. P. O'Hara, R. A. Norman, P. T. C. Wan, S. M. Roe, T. E. Barrett, R. E. Drew, L. H. Pearl
Crystal Structure And Induction Mechanism Of Amic-Amir: A Ligand-Regulated Transcription Antitermination Complex
Embo J. V. 18 5175 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: BUTYRAMIDE (BMDa)
1b: BUTYRAMIDE (BMDb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMD
2
Ligand/Ion
BUTYRAMIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:83 , MET A:84 , SER A:85 , TYR A:104 , PRO A:107 , TYR A:108 , TYR A:150 , TYR A:152
BINDING SITE FOR RESIDUE BMD A 400
2
AC2
SOFTWARE
TYR B:83 , MET B:84 , SER B:85 , TYR B:104 , PRO B:107 , TYR B:108 , TYR B:150 , TYR B:152
BINDING SITE FOR RESIDUE BMD B 500
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_AMIC_PSEAE_001 (T106N, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_AMIC_PSEAE_001
*
T
106
N
AMIC_PSEAE
---
---
A/B
T
106
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ANTAR (D:129-190,E:129-190)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANTAR
PS50921
ANTAR domain profile.
AMIR_PSEAE
129-190
2
D:129-190
E:129-190
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1qo0d_ (D:)
1b: SCOP_d1qo0e_ (E:)
2a: SCOP_d1qo0a_ (A:)
2b: SCOP_d1qo0b_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
CheY-like
(258)
Family
:
Positive regulator of the amidase operon AmiR
(1)
Protein domain
:
Positive regulator of the amidase operon AmiR
(1)
Pseudomonas aeruginosa [TaxId: 287]
(1)
1a
d1qo0d_
D:
1b
d1qo0e_
E:
Fold
:
Periplasmic binding protein-like I
(179)
Superfamily
:
Periplasmic binding protein-like I
(179)
Family
:
L-arabinose binding protein-like
(114)
Protein domain
:
Amide receptor/negative regulator of the amidase operon (AmiC)
(3)
Pseudomonas aeruginosa [TaxId: 287]
(3)
2a
d1qo0a_
A:
2b
d1qo0b_
B:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1qo0D01 (D:2-128)
1b: CATH_1qo0E01 (E:2-128)
1c: CATH_1qo0A02 (A:123-261,A:339-375)
1d: CATH_1qo0B02 (B:123-261,B:339-375)
1e: CATH_1qo0A01 (A:8-122,A:262-338)
1f: CATH_1qo0B01 (B:8-122,B:262-338)
2a: CATH_1qo0D02 (D:145-190)
2b: CATH_1qo0E02 (E:145-189)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2300, no name defined]
(308)
Pseudomonas aeruginosa. Organism_taxid: 287. Strain: pac1.
(3)
1a
1qo0D01
D:2-128
1b
1qo0E01
E:2-128
1c
1qo0A02
A:123-261,A:339-375
1d
1qo0B02
B:123-261,B:339-375
1e
1qo0A01
A:8-122,A:262-338
1f
1qo0B01
B:8-122,B:262-338
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Pseudomonas aeruginosa. Organism_taxid: 287. Strain: pac1.
(1)
2a
1qo0D02
D:145-190
2b
1qo0E02
E:145-189
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peripla_BP_5_1qo0B01 (B:9-372)
1b: PFAM_Peripla_BP_5_1qo0B02 (B:9-372)
2a: PFAM_ANTAR_1qo0E01 (E:135-190)
2b: PFAM_ANTAR_1qo0E02 (E:135-190)
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Clan
:
Periplas_BP
(97)
Family
:
Peripla_BP_5
(3)
Pseudomonas aeruginosa
(3)
1a
Peripla_BP_5-1qo0B01
B:9-372
1b
Peripla_BP_5-1qo0B02
B:9-372
Clan
:
no clan defined [family: ANTAR]
(3)
Family
:
ANTAR
(3)
Pseudomonas aeruginosa
(1)
2a
ANTAR-1qo0E01
E:135-190
2b
ANTAR-1qo0E02
E:135-190
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