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1QMV
Asym. Unit
Info
Asym.Unit (359 KB)
Biol.Unit 1 (353 KB)
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(1)
Title
:
THIOREDOXIN PEROXIDASE B FROM RED BLOOD CELLS
Authors
:
M. N. Isupov, J. A. Littlechild, A. A. Lebedev, N. Errington, A. A. Vagin E. Schroder
Date
:
07 Oct 99 (Deposition) - 28 Jul 00 (Release) - 22 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Sulphinic Acid, Thioredoxin, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Schroder, J. A. Littlechild, A. A. Lebedev, N. Errington, A. A. Vagin, M. N. Isupov
Crystal Structure Of Decameric 2-Cys Peroxiredoxin From Human Erythrocytes At 1. 7 A Resolution.
Structure V. 8 605 2000
(for further references see the
PDB file header
)
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
1b: 3-SULFINOALANINE (CSDb)
1c: 3-SULFINOALANINE (CSDc)
1d: 3-SULFINOALANINE (CSDd)
1e: 3-SULFINOALANINE (CSDe)
1f: 3-SULFINOALANINE (CSDf)
1g: 3-SULFINOALANINE (CSDg)
1h: 3-SULFINOALANINE (CSDh)
1i: 3-SULFINOALANINE (CSDi)
1j: 3-SULFINOALANINE (CSDj)
2a: N-CARBAMOYL-ALANINE (NCBa)
2b: N-CARBAMOYL-ALANINE (NCBb)
2c: N-CARBAMOYL-ALANINE (NCBc)
2d: N-CARBAMOYL-ALANINE (NCBd)
2e: N-CARBAMOYL-ALANINE (NCBe)
2f: N-CARBAMOYL-ALANINE (NCBf)
2g: N-CARBAMOYL-ALANINE (NCBg)
2h: N-CARBAMOYL-ALANINE (NCBh)
2i: N-CARBAMOYL-ALANINE (NCBi)
2j: N-CARBAMOYL-ALANINE (NCBj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
10
Mod. Amino Acid
3-SULFINOALANINE
2
NCB
10
Mod. Amino Acid
N-CARBAMOYL-ALANINE
[
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_025051 (D153E, chain A/B/C/D/E/F/G/H/I/J, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025051
D
153
E
PRDX2_HUMAN
Polymorphism
34012472
A/B/C/D/E/F/G/H/I/J
D
153
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 10)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:6-164,B:6-164,C:6-164,D:6-164,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PRDX2_HUMAN
6-164
10
A:6-164
B:6-164
C:6-164
D:6-164
E:6-164
F:6-164
G:6-164
H:6-164
I:6-164
J:6-164
[
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]
Exons
(5, 50)
Info
All Exons
Exon 1.2 (A:2-35 | B:2-35 | C:2-35 | D:2-35 ...)
Exon 1.3a (A:35-86 | B:35-86 | C:35-86 | D:35...)
Exon 1.3e (A:86-127 | B:86-127 | C:86-127 | D...)
Exon 1.3j (A:127-171 | B:127-171 | C:127-171 ...)
Exon 1.4b (A:171-198 | B:171-198 | C:171-198 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1b/1.2
2: Boundary 1.2/1.3a
3: Boundary 1.3a/1.3e
4: Boundary 1.3e/1.3j
5: Boundary 1.3j/1.4b
6: Boundary 1.4b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000301522
1b
ENSE00001899489
chr19:
12912673-12912554
120
PRDX2_HUMAN
-
0
0
-
-
1.2
ENST00000301522
2
ENSE00002162989
chr19:
12912084-12911973
112
PRDX2_HUMAN
1-35
35
10
A:2-35
B:2-35
C:2-35
D:2-35
E:2-35
F:2-35
G:2-35
H:2-35
I:2-35
J:2-35
34
34
34
34
34
34
34
34
34
34
1.3a
ENST00000301522
3a
ENSE00001117399
chr19:
12911883-12911730
154
PRDX2_HUMAN
35-86
52
10
A:35-86
B:35-86
C:35-86
D:35-86
E:35-86
F:35-86
G:35-86
H:35-86
I:35-86
J:35-86
52
52
52
52
52
52
52
52
52
52
1.3e
ENST00000301522
3e
ENSE00001117400
chr19:
12911113-12910991
123
PRDX2_HUMAN
86-127
42
10
A:86-127
B:86-127
C:86-127
D:86-127
E:86-127
F:86-127
G:86-127
H:86-127
I:86-127
J:86-127
42
42
42
42
42
42
42
42
42
42
1.3j
ENST00000301522
3j
ENSE00001718527
chr19:
12910803-12910673
131
PRDX2_HUMAN
127-171
45
10
A:127-171
B:127-171
C:127-171
D:127-171
E:127-171
F:127-171
G:127-171
H:127-171
I:127-171
J:127-171
45
45
45
45
45
45
45
45
45
45
1.4b
ENST00000301522
4b
ENSE00001925949
chr19:
12907980-12907634
347
PRDX2_HUMAN
171-198
28
10
A:171-198
B:171-198
C:171-198
D:171-198
E:171-198
F:171-198
G:171-198
H:171-198
I:171-198
J:171-198
28
28
28
28
28
28
28
28
28
28
[
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]
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1qmva_ (A:)
1b: SCOP_d1qmvb_ (B:)
1c: SCOP_d1qmvc_ (C:)
1d: SCOP_d1qmvd_ (D:)
1e: SCOP_d1qmve_ (E:)
1f: SCOP_d1qmvf_ (F:)
1g: SCOP_d1qmvg_ (G:)
1h: SCOP_d1qmvh_ (H:)
1i: SCOP_d1qmvi_ (I:)
1j: SCOP_d1qmvj_ (J:)
View:
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1qmva_
A:
1b
d1qmvb_
B:
1c
d1qmvc_
C:
1d
d1qmvd_
D:
1e
d1qmve_
E:
1f
d1qmvf_
F:
1g
d1qmvg_
G:
1h
d1qmvh_
H:
1i
d1qmvi_
I:
1j
d1qmvj_
J:
[
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1qmvA00 (A:3-198)
1b: CATH_1qmvB00 (B:3-198)
1c: CATH_1qmvC00 (C:3-198)
1d: CATH_1qmvD00 (D:3-198)
1e: CATH_1qmvE00 (E:3-198)
1f: CATH_1qmvF00 (F:3-198)
1g: CATH_1qmvG00 (G:3-198)
1h: CATH_1qmvH00 (H:3-198)
1i: CATH_1qmvI00 (I:3-198)
1j: CATH_1qmvJ00 (J:3-198)
View:
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1qmvA00
A:3-198
1b
1qmvB00
B:3-198
1c
1qmvC00
C:3-198
1d
1qmvD00
D:3-198
1e
1qmvE00
E:3-198
1f
1qmvF00
F:3-198
1g
1qmvG00
G:3-198
1h
1qmvH00
H:3-198
1i
1qmvI00
I:3-198
1j
1qmvJ00
J:3-198
[
close CATH info
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Pfam Domains
(2, 20)
Info
all PFAM domains
1a: PFAM_AhpC_TSA_1qmvJ01 (J:8-141)
1b: PFAM_AhpC_TSA_1qmvJ02 (J:8-141)
1c: PFAM_AhpC_TSA_1qmvJ03 (J:8-141)
1d: PFAM_AhpC_TSA_1qmvJ04 (J:8-141)
1e: PFAM_AhpC_TSA_1qmvJ05 (J:8-141)
1f: PFAM_AhpC_TSA_1qmvJ06 (J:8-141)
1g: PFAM_AhpC_TSA_1qmvJ07 (J:8-141)
1h: PFAM_AhpC_TSA_1qmvJ08 (J:8-141)
1i: PFAM_AhpC_TSA_1qmvJ09 (J:8-141)
1j: PFAM_AhpC_TSA_1qmvJ10 (J:8-141)
2a: PFAM_1_cysPrx_C_1qmvJ11 (J:161-196)
2b: PFAM_1_cysPrx_C_1qmvJ12 (J:161-196)
2c: PFAM_1_cysPrx_C_1qmvJ13 (J:161-196)
2d: PFAM_1_cysPrx_C_1qmvJ14 (J:161-196)
2e: PFAM_1_cysPrx_C_1qmvJ15 (J:161-196)
2f: PFAM_1_cysPrx_C_1qmvJ16 (J:161-196)
2g: PFAM_1_cysPrx_C_1qmvJ17 (J:161-196)
2h: PFAM_1_cysPrx_C_1qmvJ18 (J:161-196)
2i: PFAM_1_cysPrx_C_1qmvJ19 (J:161-196)
2j: PFAM_1_cysPrx_C_1qmvJ20 (J:161-196)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
AhpC-TSA
(28)
Homo sapiens (Human)
(4)
1a
AhpC-TSA-1qmvJ01
J:8-141
1b
AhpC-TSA-1qmvJ02
J:8-141
1c
AhpC-TSA-1qmvJ03
J:8-141
1d
AhpC-TSA-1qmvJ04
J:8-141
1e
AhpC-TSA-1qmvJ05
J:8-141
1f
AhpC-TSA-1qmvJ06
J:8-141
1g
AhpC-TSA-1qmvJ07
J:8-141
1h
AhpC-TSA-1qmvJ08
J:8-141
1i
AhpC-TSA-1qmvJ09
J:8-141
1j
AhpC-TSA-1qmvJ10
J:8-141
Clan
:
no clan defined [family: 1-cysPrx_C]
(19)
Family
:
1-cysPrx_C
(19)
Homo sapiens (Human)
(4)
2a
1-cysPrx_C-1qmvJ11
J:161-196
2b
1-cysPrx_C-1qmvJ12
J:161-196
2c
1-cysPrx_C-1qmvJ13
J:161-196
2d
1-cysPrx_C-1qmvJ14
J:161-196
2e
1-cysPrx_C-1qmvJ15
J:161-196
2f
1-cysPrx_C-1qmvJ16
J:161-196
2g
1-cysPrx_C-1qmvJ17
J:161-196
2h
1-cysPrx_C-1qmvJ18
J:161-196
2i
1-cysPrx_C-1qmvJ19
J:161-196
2j
1-cysPrx_C-1qmvJ20
J:161-196
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Asym.Unit (359 KB)
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