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1QMI
Biol. Unit 1
Info
Asym.Unit (193 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RNA 3'-TERMINAL PHOSPHATE CYCLASE, AN UBIQUITOUS ENZYME WITH UNUSUAL TOPOLOGY
Authors
:
G. J. Palm, E. Billy, W. Filipowicz, A. Wlodawer
Date
:
28 Sep 99 (Deposition) - 11 Jan 00 (Release) - 17 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ligase, 2'3'Cyclic Phosphate Rna
(Keyword Search:
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Reference
:
G. J. Palm, E. Billy, W. Filipowicz, A. Wlodawer
Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, A Ubiquitous Enzyme With Unusual Topology
Structure V. 8 13 2000
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
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No.
Name
Count
Type
Full Name
1
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
Info
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1: RTC (A:158-168,B:158-168)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RTC
PS01287
RNA 3'-terminal phosphate cyclase signature.
RTCA_ECOLI
157-167
2
A:158-168
B:158-168
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1qmia2 (A:5-184,A:280-339)
1b: SCOP_d1qmib2 (B:5-184,B:280-339)
1c: SCOP_d1qmic2 (C:5-184,C:280-339)
1d: SCOP_d1qmid2 (D:5-184,D:280-339)
2a: SCOP_d1qmia1 (A:185-279)
2b: SCOP_d1qmib1 (B:185-279)
2c: SCOP_d1qmic1 (C:185-279)
2d: SCOP_d1qmid1 (D:185-279)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
RNA 3'-terminal phosphate cyclase, RPTC
(2)
Protein domain
:
RNA 3'-terminal phosphate cyclase, RPTC
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1qmia2
A:5-184,A:280-339
1b
d1qmib2
B:5-184,B:280-339
1c
d1qmic2
C:5-184,C:280-339
1d
d1qmid2
D:5-184,D:280-339
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
RNA 3'-terminal phosphate cyclase, RPTC, insert domain
(2)
Family
:
RNA 3'-terminal phosphate cyclase, RPTC, insert domain
(2)
Protein domain
:
RNA 3'-terminal phosphate cyclase, RPTC, insert domain
(2)
Escherichia coli [TaxId: 562]
(2)
2a
d1qmia1
A:185-279
2b
d1qmib1
B:185-279
2c
d1qmic1
C:185-279
2d
d1qmid1
D:185-279
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1qmiA02 (A:186-276)
1b: CATH_1qmiB02 (B:186-276)
1c: CATH_1qmiC02 (C:186-276)
1d: CATH_1qmiD02 (D:186-276)
2a: CATH_1qmiA01 (A:6-182,A:277-336)
2b: CATH_1qmiB01 (B:6-182,B:277-336)
2c: CATH_1qmiC01 (C:6-182,C:277-336)
2d: CATH_1qmiD01 (D:6-182,D:277-336)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
[code=3.30.360.20, no name defined]
(3)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(2)
1a
1qmiA02
A:186-276
1b
1qmiB02
B:186-276
1c
1qmiC02
C:186-276
1d
1qmiD02
D:186-276
Architecture
:
Alpha-beta prism
(50)
Topology
:
UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain
(50)
Homologous Superfamily
:
[code=3.65.10.20, no name defined]
(3)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(2)
2a
1qmiA01
A:6-182,A:277-336
2b
1qmiB01
B:6-182,B:277-336
2c
1qmiC01
C:6-182,C:277-336
2d
1qmiD01
D:6-182,D:277-336
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Pfam Domains
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Asymmetric Unit 1
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