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1QMG
Biol. Unit 1
Info
Asym.Unit (368 KB)
Biol.Unit 1 (187 KB)
Biol.Unit 2 (181 KB)
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(1)
Title
:
ACETOHYDROXYACID ISOMEROREDUCTASE COMPLEXED WITH ITS REACTION PRODUCT DIHYDROXY-METHYLVALERATE, MANGANESE AND ADP-RIBOSE.
Authors
:
K. Thomazeau, R. Dumas, F. Halgand, R. Douce, V. Biou
Date
:
28 Sep 99 (Deposition) - 31 Mar 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Oxidoreductase, Branched Chain Amino Acid Biosynthesis, Reaction Product, Manganese, Adp-Ribose
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
K. Thomazeau, R. Dumas, F. Halgand, E. Forest, R. Douce, V. Biou
Structure Of Spinach Acetohydroxyacid Isomeroreductase Complexed With Its Product Of Reaction Dihydroxy-Methylvalerate, Manganese And Adp-Ribose
Acta Crystallogr. , Sect. D V. 56 389 2000
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSP... (APXa)
1b: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSP... (APXb)
1c: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSP... (APXc)
1d: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSP... (APXd)
2a: 2,3-DIHYDROXY-VALERIANIC ACID (DMVa)
2b: 2,3-DIHYDROXY-VALERIANIC ACID (DMVb)
2c: 2,3-DIHYDROXY-VALERIANIC ACID (DMVc)
2d: 2,3-DIHYDROXY-VALERIANIC ACID (DMVd)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
3g: MANGANESE (II) ION (MNg)
3h: MANGANESE (II) ION (MNh)
4a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
APX
2
Ligand/Ion
2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE
2
DMV
2
Ligand/Ion
2,3-DIHYDROXY-VALERIANIC ACID
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
4
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC2 (SOFTWARE)
8: BC3 (SOFTWARE)
9: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:315 , GLU A:319 , MN A:602 , DMV A:620 , HOH A:2664 , HOH A:2665
BINDING SITE FOR RESIDUE MN A 601
2
AC2
SOFTWARE
ASP A:315 , MN A:601 , DMV A:620 , HOH A:2666 , HOH A:2667 , HOH A:2668
BINDING SITE FOR RESIDUE MN A 602
3
AC3
SOFTWARE
ALA A:454 , GLY A:455 , HIS A:506 , HOH A:2634 , HOH A:2669 , HOH A:2670 , HOH A:2671 , HOH A:2672 , HOH A:2673 , HOH A:2674
BINDING SITE FOR RESIDUE SO4 A 603
4
AC4
SOFTWARE
ASP B:315 , GLU B:319 , MN B:602 , DMV B:620 , HOH B:2533 , HOH B:2534
BINDING SITE FOR RESIDUE MN B 601
5
AC5
SOFTWARE
ASP B:315 , MN B:601 , DMV B:620 , HOH B:2535 , HOH B:2536 , HOH B:2537
BINDING SITE FOR RESIDUE MN B 602
6
BC1
SOFTWARE
GLY A:253 , MET A:254 , ASP A:315 , GLU A:319 , GLU A:496 , CYS A:517 , SER A:518 , ALA A:521 , MN A:601 , MN A:602 , HOH A:2675
BINDING SITE FOR RESIDUE DMV A 620
7
BC2
SOFTWARE
GLY A:132 , TRP A:133 , GLY A:134 , SER A:135 , GLN A:136 , ARG A:162 , SER A:165 , SER A:167 , MET A:186 , LEU A:199 , ILE A:200 , SER A:201 , ASP A:202 , ALA A:204 , GLN A:205 , HIS A:226 , SER A:518 , THR A:519 , ARG A:589 , HOH A:2656 , HOH A:2657 , HOH A:2658 , HOH A:2659 , HOH A:2660 , HOH A:2661 , HOH A:2662 , HOH A:2663 , HOH A:2664 , HOH A:2675
BINDING SITE FOR RESIDUE APX A 600
8
BC3
SOFTWARE
MET B:254 , ASP B:315 , GLU B:319 , GLU B:496 , CYS B:517 , SER B:518 , ALA B:521 , MN B:601 , MN B:602 , HOH B:2533 , HOH B:2538
BINDING SITE FOR RESIDUE DMV B 620
9
BC4
SOFTWARE
TRP B:133 , GLY B:134 , SER B:135 , GLN B:136 , ARG B:162 , SER B:165 , SER B:167 , MET B:186 , LEU B:199 , ILE B:200 , SER B:201 , ASP B:202 , ALA B:204 , GLN B:205 , HIS B:226 , SER B:518 , THR B:519 , ARG B:589 , HOH B:2096 , HOH B:2523 , HOH B:2524 , HOH B:2525 , HOH B:2526 , HOH B:2527 , HOH B:2528 , HOH B:2529 , HOH B:2530 , HOH B:2531 , HOH B:2532 , HOH B:2533 , HOH B:2538
BINDING SITE FOR RESIDUE APX B 600
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1qmga1 (A:308-595)
1b: SCOP_d1qmgb1 (B:308-595)
1c: SCOP_d1qmgc1 (C:308-595)
1d: SCOP_d1qmgd1 (D:308-595)
2a: SCOP_d1qmga2 (A:82-307)
2b: SCOP_d1qmgb2 (B:86-307)
2c: SCOP_d1qmgc2 (C:84-307)
2d: SCOP_d1qmgd2 (D:83-307)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
(5)
Protein domain
:
Class II ketol-acid reductoisomerase
(2)
Spinach (Spinacia oleracea) [TaxId: 3562]
(2)
1a
d1qmga1
A:308-595
1b
d1qmgb1
B:308-595
1c
d1qmgc1
C:308-595
1d
d1qmgd1
D:308-595
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
6-phosphogluconate dehydrogenase-like, N-terminal domain
(69)
Protein domain
:
Class II ketol-acid reductoisomerase (KARI)
(2)
Spinach (Spinacia oleracea) [TaxId: 3562]
(2)
2a
d1qmga2
A:82-307
2b
d1qmgb2
B:86-307
2c
d1qmgc2
C:84-307
2d
d1qmgd2
D:83-307
[
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]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1qmgB01 (B:86-301)
1b: CATH_1qmgC01 (C:84-301)
1c: CATH_1qmgA01 (A:83-301)
1d: CATH_1qmgD01 (D:83-301)
2a: CATH_1qmgA02 (A:302-594)
2b: CATH_1qmgB02 (B:302-594)
2c: CATH_1qmgC02 (C:302-594)
2d: CATH_1qmgD02 (D:302-594)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Spinach (Spinacia oleracea)
(10)
1a
1qmgB01
B:86-301
1b
1qmgC01
C:84-301
1c
1qmgA01
A:83-301
1d
1qmgD01
D:83-301
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(60)
Homologous Superfamily
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(59)
Spinach (Spinacia oleracea)
(2)
2a
1qmgA02
A:302-594
2b
1qmgB02
B:302-594
2c
1qmgC02
C:302-594
2d
1qmgD02
D:302-594
[
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_IlvC_1qmgD01 (D:463-593)
1b: PFAM_IlvC_1qmgD02 (D:463-593)
1c: PFAM_IlvC_1qmgD03 (D:463-593)
1d: PFAM_IlvC_1qmgD04 (D:463-593)
1e: PFAM_IlvC_1qmgD05 (D:463-593)
1f: PFAM_IlvC_1qmgD06 (D:463-593)
1g: PFAM_IlvC_1qmgD07 (D:463-593)
1h: PFAM_IlvC_1qmgD08 (D:463-593)
2a: PFAM_IlvN_1qmgD09 (D:122-303)
2b: PFAM_IlvN_1qmgD10 (D:122-303)
2c: PFAM_IlvN_1qmgD11 (D:122-303)
2d: PFAM_IlvN_1qmgD12 (D:122-303)
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Clans
(
)
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
6PGD_C
(47)
Family
:
IlvC
(2)
Spinacia oleracea (Spinach)
(1)
1a
IlvC-1qmgD01
D:463-593
1b
IlvC-1qmgD02
D:463-593
1c
IlvC-1qmgD03
D:463-593
1d
IlvC-1qmgD04
D:463-593
1e
IlvC-1qmgD05
D:463-593
1f
IlvC-1qmgD06
D:463-593
1g
IlvC-1qmgD07
D:463-593
1h
IlvC-1qmgD08
D:463-593
Clan
:
NADP_Rossmann
(1239)
Family
:
IlvN
(2)
Spinacia oleracea (Spinach)
(1)
2a
IlvN-1qmgD09
D:122-303
2b
IlvN-1qmgD10
D:122-303
2c
IlvN-1qmgD11
D:122-303
2d
IlvN-1qmgD12
D:122-303
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Asym.Unit (368 KB)
Header - Asym.Unit
Biol.Unit 1 (187 KB)
Header - Biol.Unit 1
Biol.Unit 2 (181 KB)
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