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1QM3
Asym. Unit
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Asym.Unit (547 KB)
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Models
(20 )
Title
:
HUMAN PRION PROTEIN FRAGMENT 121-230
Authors
:
R. Zahn, A. Liu, T. Luhrs, K. Wuthrich
Date
:
20 Sep 99 (Deposition) - 16 Dec 99 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Prion Protein, Prion, Brain, Glycoprotein, Gpi-Anchor, Repeat, Polymorphism, Disease Mutation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Zahn, A. Liu, T. Luhrs, R. Riek, C. Von Schroetter, F. L. Garcia, M. Billeter, L. Calzolai, G. Wider, K. Wuthrich
Nmr Solution Structure Of The Human Prion Protein
Proc. Natl. Acad. Sci. Usa V. 97 145 2000
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(20, 20)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_006467 (M129V, chain A, )
02: VAR_014264 (G131V, chain A, )
03: VAR_006468 (N171S, chain A, )
04: VAR_006469 (D178N, chain A, )
05: VAR_006470 (V180I, chain A, )
06: VAR_006471 (T183A, chain A, )
07: VAR_008746 (H187R, chain A, )
08: VAR_008748 (T188K, chain A, )
09: VAR_008747 (T188R, chain A, )
10: VAR_008749 (E196K, chain A, )
11: VAR_006472 (F198S, chain A, )
12: VAR_006473 (E200K, chain A, )
13: VAR_008750 (D202N, chain A, )
14: VAR_008751 (V203I, chain A, )
15: VAR_006474 (R208H, chain A, )
16: VAR_006475 (V210I, chain A, )
17: VAR_008752 (E211Q, chain A, )
18: VAR_008753 (Q212P, chain A, )
19: VAR_006476 (Q217R, chain A, )
20: VAR_006477 (E219K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_006467
M
129
V
PRIO_HUMAN
Polymorphism
1799990
A
M
129
V
02
UniProt
VAR_014264
G
131
V
PRIO_HUMAN
Disease (GSD)
---
A
G
131
V
03
UniProt
VAR_006468
N
171
S
PRIO_HUMAN
Polymorphism
16990018
A
N
171
S
04
UniProt
VAR_006469
D
178
N
PRIO_HUMAN
Disease (FFI)
---
A
D
178
N
05
UniProt
VAR_006470
V
180
I
PRIO_HUMAN
Disease (CJD)
---
A
V
180
I
06
UniProt
VAR_006471
T
183
A
PRIO_HUMAN
Unclassified
---
A
T
183
A
07
UniProt
VAR_008746
H
187
R
PRIO_HUMAN
Disease (GSD)
---
A
H
187
R
08
UniProt
VAR_008748
T
188
K
PRIO_HUMAN
Unclassified
---
A
T
188
K
09
UniProt
VAR_008747
T
188
R
PRIO_HUMAN
Polymorphism
---
A
T
188
R
10
UniProt
VAR_008749
E
196
K
PRIO_HUMAN
Disease (CJD)
---
A
E
196
K
11
UniProt
VAR_006472
F
198
S
PRIO_HUMAN
Disease (GSD)
---
A
F
198
S
12
UniProt
VAR_006473
E
200
K
PRIO_HUMAN
Disease (CJD)
---
A
E
200
K
13
UniProt
VAR_008750
D
202
N
PRIO_HUMAN
Disease (GSD)
---
A
D
202
N
14
UniProt
VAR_008751
V
203
I
PRIO_HUMAN
Disease (CJD)
---
A
V
203
I
15
UniProt
VAR_006474
R
208
H
PRIO_HUMAN
Disease (CJD)
---
A
R
208
H
16
UniProt
VAR_006475
V
210
I
PRIO_HUMAN
Disease (CJD)
---
A
V
210
I
17
UniProt
VAR_008752
E
211
Q
PRIO_HUMAN
Disease (CJD)
---
A
E
211
Q
18
UniProt
VAR_008753
Q
212
P
PRIO_HUMAN
Disease (GSD)
---
A
Q
212
P
19
UniProt
VAR_006476
Q
217
R
PRIO_HUMAN
Disease (GSD)
---
A
Q
217
R
20
UniProt
VAR_006477
E
219
K
PRIO_HUMAN
Polymorphism
1800014
A
E
219
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PRION_2 (A:200-218)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRION_2
PS00706
Prion protein signature 2.
PRIO_HUMAN
200-218
1
A:200-218
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]
Exons
(1, 1)
Info
All Exons
Exon 1.2e (A:125-228)
View:
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All Exon Boundaries
1: Boundary 1.1c/1.2e
2: Boundary 1.2e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000379440
1c
ENSE00001957346
chr20:
4666882-4667158
277
PRIO_HUMAN
-
0
0
-
-
1.2e
ENST00000379440
2e
ENSE00001928116
chr20:
4679857-4682236
2380
PRIO_HUMAN
1-257
257
1
A:125-228
104
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1qm3a_ (A:)
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Classes
(
)
(
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Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Prion-like
(73)
Superfamily
:
Prion-like
(73)
Family
:
Prion-like
(73)
Protein domain
:
Prion protein domain
(42)
Human (Homo sapiens) [TaxId: 9606]
(18)
1a
d1qm3a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1qm3A00 (A:125-228)
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Classes
(
)
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Architectures
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Major Prion Protein
(62)
Homologous Superfamily
:
Major Prion Protein
(62)
Human (Homo sapiens)
(28)
1a
1qm3A00
A:125-228
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Prion_1qm3A01 (A:134-228)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Prion]
(32)
Family
:
Prion
(32)
Homo sapiens (Human)
(7)
1a
Prion-1qm3A01
A:134-228
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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