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1QLT
Asym. Unit
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Asym.Unit (192 KB)
Biol.Unit 1 (728 KB)
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(1)
Title
:
STRUCTURE OF THE H422A MUTANT OF THE FLAVOENZYME VANILLYL-ALCOHOL OXIDASE
Authors
:
A. Mattevi, M. Fraaije
Date
:
16 Sep 99 (Deposition) - 20 Sep 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Keywords
:
Oxidoreductase, Flavoprotein, Methanol Utilization, Peroxisome, Flavoenzyme, Oxidase, Catalysis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Fraaije, R. H. H. Van Den Heuvel, W. J. H. Van Berkel, A. Mattevi
Covalent Flavinylation Is Essential For Efficient Redox Catalysis In Vanillyl-Alcohol Oxidase.
J. Biol. Chem. V. 274 35514 2000
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:108 , PHE A:424 , TYR A:503 , ARG A:504 , FAD A:600 , HOH A:2207
BINDING SITE FOR RESIDUE ACT A 601
2
AC2
SOFTWARE
TYR B:108 , PHE B:424 , ILE B:468 , TYR B:503 , ARG B:504
BINDING SITE FOR RESIDUE ACT B 601
3
AC3
SOFTWARE
PRO A:99 , SER A:101 , ILE A:102 , GLY A:103 , ARG A:104 , ASN A:105 , SER A:106 , PRO A:169 , ASP A:170 , LEU A:171 , GLY A:174 , SER A:175 , ASN A:179 , GLU A:182 , GLY A:184 , VAL A:185 , TYR A:187 , GLY A:260 , VAL A:262 , PHE A:424 , ARG A:504 , LYS A:545 , ACT A:601 , HOH A:2059 , HOH A:2205 , HOH A:2206
BINDING SITE FOR RESIDUE FAD A 600
4
AC4
SOFTWARE
PRO B:99 , ILE B:100 , SER B:101 , ILE B:102 , GLY B:103 , ARG B:104 , ASN B:105 , SER B:106 , PRO B:169 , ASP B:170 , LEU B:171 , GLY B:174 , SER B:175 , ASN B:179 , GLU B:182 , GLY B:184 , VAL B:185 , TYR B:187 , GLY B:260 , ILE B:261 , VAL B:262 , TRP B:413 , PHE B:424 , ARG B:504 , LYS B:545 , HOH B:2165
BINDING SITE FOR RESIDUE FAD B 600
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FAD_PCMH (A:67-272,B:67-272)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_PCMH
PS51387
PCMH-type FAD-binding domain profile.
VAOX_PENSI
67-272
2
A:67-272
B:67-272
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1qlta2 (A:6-273)
1b: SCOP_d1qltb2 (B:6-273)
2a: SCOP_d1qlta1 (A:274-560)
2b: SCOP_d1qltb1 (B:274-560)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
FAD-linked oxidases, N-terminal domain
(29)
Protein domain
:
Vanillyl-alcohol oxidase
(16)
Fungus (Penicillium simplicissimum) [TaxId: 69488]
(16)
1a
d1qlta2
A:6-273
1b
d1qltb2
B:6-273
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
FAD-linked oxidases, C-terminal domain
(42)
Family
:
Vanillyl-alcohol oxidase-like
(20)
Protein domain
:
Vanillyl-alcohol oxidase
(16)
Fungus (Penicillium simplicissimum) [TaxId: 69488]
(16)
2a
d1qlta1
A:274-560
2b
d1qltb1
B:274-560
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1qltA01 (A:6-128)
1b: CATH_1qltB01 (B:6-128)
2a: CATH_1qltA02 (A:129-151,A:165-215,A:235-271)
2b: CATH_1qltB02 (B:129-151,B:165-215,B:235-271)
3a: CATH_1qltA03 (A:276-506)
3b: CATH_1qltB03 (B:276-506)
4a: CATH_1qltA04 (A:507-559)
4b: CATH_1qltB04 (B:507-559)
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(
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(
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2
(50)
Homologous Superfamily
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2
(50)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
1a
1qltA01
A:6-128
1b
1qltB01
B:6-128
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
(63)
Homologous Superfamily
:
[code=3.30.465.10, no name defined]
(63)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
2a
1qltA02
A:129-151,A:165-215,A:235-271
2b
1qltB02
B:129-151,B:165-215,B:235-271
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Vanillyl-alcohol Oxidase; Chain A, domain 3
(23)
Homologous Superfamily
:
Vanillyl-alcohol Oxidase; Chain A, domain 3
(23)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
3a
1qltA03
A:276-506
3b
1qltB03
B:276-506
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Vanillyl-alcohol Oxidase; Chain A, domain 4
(22)
Homologous Superfamily
:
Vanillyl-alcohol Oxidase; Chain A, domain 4
(22)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
4a
1qltA04
A:507-559
4b
1qltB04
B:507-559
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_FAD_oxidase_C_1qltB01 (B:306-546)
1b: PFAM_FAD_oxidase_C_1qltB02 (B:306-546)
2a: PFAM_FAD_binding_4_1qltB03 (B:71-213)
2b: PFAM_FAD_binding_4_1qltB04 (B:71-213)
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)
Clan
:
FAD-oxidase_C
(26)
Family
:
FAD-oxidase_C
(13)
Penicillium simplicissimum
(8)
1a
FAD-oxidase_C-1qltB01
B:306-546
1b
FAD-oxidase_C-1qltB02
B:306-546
Clan
:
FAD_PCMH
(53)
Family
:
FAD_binding_4
(31)
Penicillium simplicissimum
(8)
2a
FAD_binding_4-1qltB03
B:71-213
2b
FAD_binding_4-1qltB04
B:71-213
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Asymmetric Unit 1
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Asym.Unit (192 KB)
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