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1QLK
Asym. Unit
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Asym.Unit (984 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF CA(2+)-LOADED RAT S100B (BETABETA) NMR, 20 STRUCTURES
Authors
:
A. C. Drohat, D. M. Baldisseri, R. R. Rustandi, D. J. Weber
Date
:
26 Sep 97 (Deposition) - 11 Nov 98 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
S100Beta, S100B, Nmr, Ef-Hand, S100 Protein, Calcium- Binding Protein, Four-Helix Bundle
(Keyword Search:
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Reference
:
A. C. Drohat, D. M. Baldisseri, R. R. Rustandi, D. J. Weber
Solution Structure Of Calcium-Bound Rat S100B(Betabeta) As Determined By Nuclear Magnetic Resonance Spectroscopy, .
Biochemistry V. 37 2729 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:17 , SER A:18 , GLU A:21 , LYS A:24 , HIS A:25
BINDING SITE FOR RESIDUE CA A 92
2
AC2
SOFTWARE
ASP A:61 , GLU A:62 , ASP A:63 , ASP A:65
BINDING SITE FOR RESIDUE CA A 93
3
AC3
SOFTWARE
PHE B:14 , SER B:18 , ASP B:23 , LYS B:26 , LEU B:27
BINDING SITE FOR RESIDUE CA B 92
4
AC4
SOFTWARE
ASP B:61 , GLU B:62 , ASP B:63 , ASP B:65 , GLU B:67 , CYS B:68
BINDING SITE FOR RESIDUE CA B 93
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:48-83,B:48-83)
2: S100_CABP (A:56-77,B:56-77)
3: EF_HAND_1 (A:61-73,B:61-73)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
S100B_RAT
49-84
2
A:48-83
B:48-83
2
S100_CABP
PS00303
S-100/ICaBP type calcium binding protein signature.
S100B_RAT
57-78
2
A:56-77
B:56-77
3
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
S100B_RAT
62-74
2
A:61-73
B:61-73
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Exons
(2, 4)
Info
All Exons
Exon 1.2 (A:0-45 | B:0-45)
Exon 1.3 (A:46-91 | B:46-91)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000001743
1
ENSRNOE00000012113
chr20:
12824508-12824397
112
S100B_RAT
-
0
0
-
-
1.2
ENSRNOT00000001743
2
ENSRNOE00000012114
chr20:
12796288-12796143
146
S100B_RAT
1-46
46
2
A:0-45
B:0-45
46
46
1.3
ENSRNOT00000001743
3
ENSRNOE00000012115
chr20:
12792665-12791440
1226
S100B_RAT
47-92
46
2
A:46-91
B:46-91
46
46
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1qlka_ (A:)
1b: SCOP_d1qlkb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
S100 proteins
(101)
Protein domain
:
Calcyclin (S100)
(69)
Norway rat (Rattus norvegicus), s100b [TaxId: 10116]
(7)
1a
d1qlka_
A:
1b
d1qlkb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1qlkA00 (A:0-91)
1b: CATH_1qlkB00 (B:0-91)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Norway rat (Rattus norvegicus)
(37)
1a
1qlkA00
A:0-91
1b
1qlkB00
B:0-91
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_S_100_1qlkB01 (B:3-46)
1b: PFAM_S_100_1qlkB02 (B:3-46)
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Clan
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EF_hand
(270)
Family
:
S_100
(63)
Rattus norvegicus (Rat)
(9)
1a
S_100-1qlkB01
B:3-46
1b
S_100-1qlkB02
B:3-46
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Asymmetric Unit 1
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