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1QKR
Asym. Unit
Info
Asym.Unit (70 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE VINCULIN TAIL AND A PATHWAY FOR ACTIVATION
Authors
:
C. Bakolitsa, J. M. De Pereda, C. R. Bagshaw, D. R. Critchley, R. C. Liddington
Date
:
04 Aug 99 (Deposition) - 04 Aug 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Actin Cytoskeleton, Cell Adhesion, Helical Bundle, Lipid Binding
(Keyword Search:
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Reference
:
C. Bakolitsa, J. M. De Pereda, C. R. Bagshaw, D. R. Critchley, R. C. Liddington
Crystal Structure Of The Vinculin Tail And A Pathway For Activation
Cell(Cambridge, Mass. ) V. 99 603 1999
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:906 , ARG A:910 , LYS A:1061 , HOH A:2180 , SER B:941
BINDING SITE FOR RESIDUE SO4 A1070
2
AC2
SOFTWARE
HOH B:2136
BINDING SITE FOR RESIDUE SO4 B1070
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(5, 10)
Info
All Exons
Exon 1.19 (A:881-890 | B:880-890)
Exon 1.20 (A:891-915 | B:891-915)
Exon 1.21 (A:916-958 | B:916-958)
Exon 1.22 (A:959-993 | B:959-993)
Exon 1.23b (A:994-1041 | B:994-1041)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.18/1.19
2: Boundary 1.19/1.20
3: Boundary 1.20/1.21
4: Boundary 1.21/1.22
5: Boundary 1.22/1.23b
6: Boundary 1.23b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000008145
1
ENSGALE00000053744
chr6:
16537808-16537722
87
VINC_CHICK
1-29
29
0
-
-
1.2
ENSGALT00000008145
2
ENSGALE00000053740
chr6:
16519003-16518933
71
VINC_CHICK
30-53
24
0
-
-
1.3a
ENSGALT00000008145
3a
ENSGALE00000053756
chr6:
16512719-16512569
151
VINC_CHICK
53-103
51
0
-
-
1.4
ENSGALT00000008145
4
ENSGALE00000053745
chr6:
16510654-16510546
109
VINC_CHICK
104-140
37
0
-
-
1.5
ENSGALT00000008145
5
ENSGALE00000053754
chr6:
16508878-16508756
123
VINC_CHICK
140-181
42
0
-
-
1.6
ENSGALT00000008145
6
ENSGALE00000053758
chr6:
16507252-16507092
161
VINC_CHICK
181-234
54
0
-
-
1.7
ENSGALT00000008145
7
ENSGALE00000053751
chr6:
16501242-16501152
91
VINC_CHICK
235-265
31
0
-
-
1.8
ENSGALT00000008145
8
ENSGALE00000053757
chr6:
16499876-16499729
148
VINC_CHICK
265-314
50
0
-
-
1.9
ENSGALT00000008145
9
ENSGALE00000053755
chr6:
16499239-16499086
154
VINC_CHICK
314-365
52
0
-
-
1.10
ENSGALT00000008145
10
ENSGALE00000053750
chr6:
16498296-16498121
176
VINC_CHICK
366-424
59
0
-
-
1.11b
ENSGALT00000008145
11b
ENSGALE00000267361
chr6:
16496998-16496808
191
VINC_CHICK
424-488
65
0
-
-
1.12
ENSGALT00000008145
12
ENSGALE00000053753
chr6:
16496312-16496113
200
VINC_CHICK
488-554
67
0
-
-
1.13b
ENSGALT00000008145
13b
ENSGALE00000267355
chr6:
16495519-16495387
133
VINC_CHICK
555-599
45
0
-
-
1.14
ENSGALT00000008145
14
ENSGALE00000267347
chr6:
16494529-16494528
2
VINC_CHICK
599-599
1
0
-
-
1.15
ENSGALT00000008145
15
ENSGALE00000053736
chr6:
16494431-16494282
150
VINC_CHICK
600-649
50
0
-
-
1.16
ENSGALT00000008145
16
ENSGALE00000053752
chr6:
16493681-16493573
109
VINC_CHICK
650-686
37
0
-
-
1.17
ENSGALT00000008145
17
ENSGALE00000053743
chr6:
16492582-16492280
303
VINC_CHICK
686-787
102
0
-
-
1.18
ENSGALT00000008145
18
ENSGALE00000053738
chr6:
16491676-16491552
125
VINC_CHICK
787-828
42
0
-
-
1.19
ENSGALT00000008145
19
ENSGALE00000053737
chr6:
16491215-16491030
186
VINC_CHICK
829-890
62
2
A:881-890
B:880-890
10
11
1.20
ENSGALT00000008145
20
ENSGALE00000053759
chr6:
16488005-16487799
207
VINC_CHICK
891-959
69
2
A:891-915
B:891-915
25
25
1.21
ENSGALT00000008145
21
ENSGALE00000053749
chr6:
16485617-16485414
204
VINC_CHICK
960-1027
68
2
A:916-958
B:916-958
43
43
1.22
ENSGALT00000008145
22
ENSGALE00000053741
chr6:
16484789-16484685
105
VINC_CHICK
1028-1062
35
2
A:959-993
B:959-993
35
35
1.23b
ENSGALT00000008145
23b
ENSGALE00000267322
chr6:
16484014-16483843
172
VINC_CHICK
1063-1110
48
2
A:994-1041
B:994-1041
48
48
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1qkra_ (A:)
1b: SCOP_d1qkrb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
alpha-catenin/vinculin-like
(25)
Family
:
alpha-catenin/vinculin
(24)
Protein domain
:
Vinculin
(12)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
1a
d1qkra_
A:
1b
d1qkrb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1qkrB00 (B:880-1064)
1b: CATH_1qkrA00 (A:881-1061)
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)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.230, no name defined]
(23)
Chicken (Gallus gallus)
(9)
1a
1qkrB00
B:880-1064
1b
1qkrA00
A:881-1061
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Vinculin_1qkrB01 (B:916-1064)
1b: PFAM_Vinculin_1qkrB02 (B:916-1064)
1c: PFAM_Vinculin_1qkrB03 (B:916-1064)
1d: PFAM_Vinculin_1qkrB04 (B:916-1064)
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(
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Organisms
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)
(
)
Clan
:
no clan defined [family: Vinculin]
(16)
Family
:
Vinculin
(16)
Gallus gallus (Chicken)
(7)
1a
Vinculin-1qkrB01
B:916-1064
1b
Vinculin-1qkrB02
B:916-1064
1c
Vinculin-1qkrB03
B:916-1064
1d
Vinculin-1qkrB04
B:916-1064
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