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1QK2
Asym. Unit
Info
Asym.Unit (135 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (66 KB)
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(1)
Title
:
WILD TYPE CEL6A WITH A NON-HYDROLYSABLE CELLOTETRAOSE
Authors
:
J. -Y. Zou, T. A. Jones
Date
:
09 Jul 99 (Deposition) - 18 Sep 99 (Release) - 27 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Glycosidase, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. -Y. Zou, G. J. Kleywegt, J. Stahlberg, H. Driguez, W. Nerinckx, M. Claeyssens, A. Koivula, T. T. Teeri, T. A. Jones
Crystallographic Evidence For Substrate Ring Distortion And Protein Conformational Changes During Catalysis In Cellobiohydrolase Cel6A From Trichoderma Reesei
Structure V. 7 1035 1999
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(5, 26)
Info
All Hetero Components
1a: ALPHA-D-GLUCOSE (GLCa)
1b: ALPHA-D-GLUCOSE (GLCb)
1c: ALPHA-D-GLUCOSE (GLCc)
1d: ALPHA-D-GLUCOSE (GLCd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
3a: O1-METHYL-GLUCOSE (MGLa)
3b: O1-METHYL-GLUCOSE (MGLb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5a: 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOS... (SGCa)
5b: 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOS... (SGCb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLC
4
Ligand/Ion
ALPHA-D-GLUCOSE
2
MAN
14
Ligand/Ion
ALPHA-D-MANNOSE
3
MGL
2
Ligand/Ion
O1-METHYL-GLUCOSE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SGC
2
Ligand/Ion
4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:87 , TYR A:88 , SER A:89 , HOH A:2259
BINDING SITE FOR MONO-SACCHARIDE MAN A 503 BOUND TO THR A 87
02
AC2
SOFTWARE
THR A:97 , ASN A:161 , HOH A:2060 , HOH A:2260
BINDING SITE FOR MONO-SACCHARIDE MAN A 504 BOUND TO THR A 97
03
AC3
SOFTWARE
TYR A:103 , SER A:106 , LEU A:111 , MAN A:507 , HOH A:2261
BINDING SITE FOR MONO-SACCHARIDE MAN A 505 BOUND TO SER A 106
04
AC4
SOFTWARE
ALA A:105 , SER A:109 , ALA A:125 , LYS A:129 , HOH A:2024 , HOH A:2262 , ASN B:339
BINDING SITE FOR MONO-SACCHARIDE MAN A 506 BOUND TO SER A 109
05
AC5
SOFTWARE
SER A:106 , SER A:110 , MAN A:505 , HOH A:2263 , HOH A:2264 , GLN B:281 , HIS B:340
BINDING SITE FOR MONO-SACCHARIDE MAN A 507 BOUND TO SER A 110
06
AC6
SOFTWARE
SER A:115 , GLN A:432 , HOH A:2241 , HOH A:2265 , HOH A:2266 , HOH A:2269 , HOH A:2270 , HOH A:2271
BINDING SITE FOR MONO-SACCHARIDE MAN A 508 BOUND TO SER A 115
07
AC7
SOFTWARE
GLY A:118 , THR A:122 , HOH A:2272
BINDING SITE FOR MONO-SACCHARIDE MAN A 509 BOUND TO THR A 122
08
AC8
SOFTWARE
LEU A:243 , GLU A:244 , ASN A:247 , ASN A:289 , HOH A:2254
BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 289
09
AC9
SOFTWARE
TRP A:309 , ASN A:310 , THR A:312 , PHE A:391 , HOH A:2255 , HOH A:2256 , HOH A:2257 , HOH A:2258
BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 310
10
BC1
SOFTWARE
THR B:85 , THR B:87 , GLY B:372 , ASN B:441 , HOH B:2257
BINDING SITE FOR MONO-SACCHARIDE MAN B 503 BOUND TO THR B 87
11
BC2
SOFTWARE
THR B:97 , ASN B:161 , TYR B:162
BINDING SITE FOR MONO-SACCHARIDE MAN B 504 BOUND TO THR B 97
12
BC3
SOFTWARE
TYR B:103 , SER B:106 , GLU B:107 , LEU B:111 , MAN B:507 , HOH B:2258
BINDING SITE FOR MONO-SACCHARIDE MAN B 505 BOUND TO SER B 106
13
BC4
SOFTWARE
ALA B:105 , SER B:109 , ALA B:125 , ALA B:128 , LYS B:129 , HOH B:2259
BINDING SITE FOR MONO-SACCHARIDE MAN B 506 BOUND TO SER B 109
14
BC5
SOFTWARE
SER B:106 , SER B:110 , MAN B:505 , HOH B:2260
BINDING SITE FOR MONO-SACCHARIDE MAN B 507 BOUND TO SER B 110
15
BC6
SOFTWARE
SER B:115 , GLN B:432 , HOH B:2261
BINDING SITE FOR MONO-SACCHARIDE MAN B 508 BOUND TO SER B 115
16
BC7
SOFTWARE
GLY B:118 , THR B:122
BINDING SITE FOR MONO-SACCHARIDE MAN B 509 BOUND TO THR B 122
17
BC8
SOFTWARE
LEU B:243 , GLU B:244 , ASN B:247 , ASN B:289 , HOH B:2255 , HOH B:2256
BINDING SITE FOR MONO-SACCHARIDE NAG B 501 BOUND TO ASN B 289
18
BC9
SOFTWARE
TRP B:309 , ASN B:310 , HOH B:2172
BINDING SITE FOR MONO-SACCHARIDE NAG B 502 BOUND TO ASN B 310
19
CC1
SOFTWARE
TRP A:135 , ASP A:137 , TYR A:169 , ASP A:221 , ASN A:229 , HIS A:266 , ALA A:304 , ASN A:305 , TRP A:364 , GLY A:365 , TRP A:367 , LYS A:395 , GLU A:399 , ASP A:401 , HOH A:2103 , HOH A:2273 , HOH A:2274 , HOH A:2275 , HOH A:2276 , HOH A:2277 , HOH A:2278
BINDING SITE FOR POLY-SACCHARIDE RESIDUES MGL A 901 THROUGH GLC A 904
20
CC2
SOFTWARE
TRP A:135 , ASP A:137 , TYR A:169 , ASP A:221 , ASN A:229 , HIS A:266 , ALA A:304 , ASN A:305 , TRP A:364 , GLY A:365 , TRP A:367 , LYS A:395 , GLU A:399 , ASP A:401 , HOH A:2103 , HOH A:2273 , HOH A:2274 , HOH A:2275 , HOH A:2276 , HOH A:2277 , HOH A:2278 , TRP B:135 , ASP B:137 , TYR B:169 , ASN B:229 , HIS B:266 , GLY B:268 , TRP B:269 , ALA B:304 , ASN B:305 , GLY B:365 , TRP B:367 , LYS B:395 , GLU B:399 , ASP B:401 , HOH B:2096 , HOH B:2154 , HOH B:2262 , HOH B:2263 , HOH B:2264 , HOH B:2265 , HOH B:2266 , HOH B:2267
BINDING SITE FOR POLY-SACCHARIDE RESIDUES MGL B 901 THROUGH GLC B 904
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F6_1 (A:167-183,B:167-183)
2: GLYCOSYL_HYDROL_F6_2 (A:215-224,B:215-224)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F6_1
PS00655
Glycosyl hydrolases family 6 signature 1.
GUX2_HYPJE
191-207
2
A:167-183
B:167-183
2
GLYCOSYL_HYDROL_F6_2
PS00656
Glycosyl hydrolases family 6 signature 2.
GUX2_HYPJE
239-248
2
A:215-224
B:215-224
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1qk2a_ (A:)
1b: SCOP_d1qk2b_ (B:)
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(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycosyl hydrolases family 6, cellulases
(42)
Family
:
Glycosyl hydrolases family 6, cellulases
(34)
Protein domain
:
Cellobiohydrolase II (Cel6)
(17)
Trichoderma reesei, Cel6a [TaxId: 51453]
(7)
1a
d1qk2a_
A:
1b
d1qk2b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1qk2A00 (A:85-447)
1b: CATH_1qk2B00 (B:85-447)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
7-stranded glycosidases (cellulases)
(28)
Trichoderma reesei. Organism_taxid: 51453.
(4)
1a
1qk2A00
A:85-447
1b
1qk2B00
B:85-447
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
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