PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1QK1
Asym. Unit
Info
Asym.Unit (498 KB)
Biol.Unit 1 (493 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN UBIQUITOUS MITOCHONDRIAL CREATINE KINASE
Authors
:
M. Eder, U. Schlattner, K. Fritz-Wolf, T. Wallimann, W. Kabsch
Date
:
08 Jul 99 (Deposition) - 11 Apr 00 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Transferase (Creatine Kinase), Mitochondrial Creatine Kinase, Cancer, Cellular Energy Metabolism, Guanidino Kinase, Mitochondrial Permeability Transition, Octamer Stability
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Eder, K. Fritz-Wolf, W. Kabsch, T. Wallimann, U. Schlattner
Crystal Structure Of Human Ubiquitous Mitochondrial Creatin Kinase
Proteins: Struct. , Funct. , V. 39 216 2000 Genet.
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 8)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
1h: PHOSPHATE ION (PO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
8
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:125 , ARG A:127 , ARG A:287
BINDING SITE FOR RESIDUE PO4 A 400
2
AC2
SOFTWARE
ARG B:125 , ARG B:127 , ARG B:287
BINDING SITE FOR RESIDUE PO4 B 400
3
AC3
SOFTWARE
ARG C:125 , ARG C:127 , ARG C:287
BINDING SITE FOR RESIDUE PO4 C 400
4
AC4
SOFTWARE
ARG D:125 , ARG D:127 , ARG D:287
BINDING SITE FOR RESIDUE PO4 D 400
5
AC5
SOFTWARE
ARG E:125 , ARG E:127 , ARG E:287
BINDING SITE FOR RESIDUE PO4 E 400
6
AC6
SOFTWARE
ARG F:125 , ARG F:127 , ARG F:287
BINDING SITE FOR RESIDUE PO4 F 400
7
AC7
SOFTWARE
ARG G:125 , ARG G:127 , ARG G:287 , ARG G:315
BINDING SITE FOR RESIDUE PO4 G 400
8
AC8
SOFTWARE
ARG H:125 , ARG H:127 , ARG H:287
BINDING SITE FOR RESIDUE PO4 H 400
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 24)
Info
All PROSITE Patterns/Profiles
1: PHOSPHAGEN_KINASE_N (A:7-93,B:7-93,C:7-93,D:7-93,E:7-93...)
2: PHOSPHAGEN_KINASE_C (A:120-362,B:120-362,C:120-362,D:12...)
3: PHOSPHAGEN_KINASE (A:278-284,B:278-284,C:278-284,D:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHOSPHAGEN_KINASE_N
PS51509
Phosphagen kinase N-terminal domain profile.
KCRU_HUMAN
45-131
8
A:7-93
B:7-93
C:7-93
D:7-93
E:7-93
F:7-93
G:7-93
H:7-93
2
PHOSPHAGEN_KINASE_C
PS51510
Phosphagen kinase C-terminal domain profile.
KCRU_HUMAN
158-400
8
A:120-362
B:120-362
C:120-362
D:120-362
E:120-362
F:120-362
G:120-362
H:120-362
3
PHOSPHAGEN_KINASE
PS00112
Phosphagen kinase active site signature.
KCRU_HUMAN
316-322
8
A:278-284
B:278-284
C:278-284
D:278-284
E:278-284
F:278-284
G:278-284
H:278-284
[
close PROSITE info
]
Exons
(9, 72)
Info
All Exons
Exon 1.3f (A:1-12 | B:1-12 | C:1-12 | D:1-12 ...)
Exon 1.5g (A:12-78 | B:12-78 | C:12-78 | D:12...)
Exon 1.6c (A:79-110 | B:79-110 | C:79-110 | D...)
Exon 1.7b (A:111-184 | B:111-184 | C:111-184 ...)
Exon 1.8b (A:185-213 | B:185-213 | C:185-213 ...)
Exon 1.9a (A:213-254 | B:213-254 | C:213-254 ...)
Exon 1.10c (A:255-299 | B:255-299 | C:255-299 ...)
Exon 1.11 (A:300-341 | B:300-341 | C:300-341 ...)
Exon 1.12a (A:342-379 | B:342-379 | C:342-379 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.3f
02: Boundary 1.3f/1.5g
03: Boundary 1.5g/1.6c
04: Boundary 1.6c/1.7b
05: Boundary 1.7b/1.8b
06: Boundary 1.8b/1.9a
07: Boundary 1.9a/1.10c
08: Boundary 1.10c/1.11
09: Boundary 1.11/1.12a
10: Boundary 1.12a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000300283
1a
ENSE00001625013
chr15:
43885252-43885469
218
KCRU_HUMAN
-
0
0
-
-
1.3f
ENST00000300283
3f
ENSE00002170251
chr15:
43886243-43886565
323
KCRU_HUMAN
1-50
50
8
A:1-12
B:1-12
C:1-12
D:1-12
E:1-12
F:1-12
G:1-12
H:1-12
12
12
12
12
12
12
12
12
1.5g
ENST00000300283
5g
ENSE00001787823
chr15:
43887170-43887368
199
KCRU_HUMAN
50-116
67
8
A:12-78
B:12-78
C:12-78
D:12-78
E:12-78
F:12-78
G:12-78
H:12-78
67
67
67
67
67
67
67
67
1.6c
ENST00000300283
6c
ENSE00001685231
chr15:
43887572-43887667
96
KCRU_HUMAN
117-148
32
8
A:79-110
B:79-110
C:79-110
D:79-110
E:79-110
F:79-110
G:79-110
H:79-110
32
32
32
32
32
32
32
32
1.7b
ENST00000300283
7b
ENSE00001796028
chr15:
43888054-43888275
222
KCRU_HUMAN
149-222
74
8
A:111-184
B:111-184
C:111-184
D:111-184
E:111-184
F:111-184
G:111-184
H:111-184
74
74
74
74
74
74
74
74
1.8b
ENST00000300283
8b
ENSE00001764477
chr15:
43888405-43888490
86
KCRU_HUMAN
223-251
29
8
A:185-213
B:185-213
C:185-213
D:185-213
E:185-213
F:185-213
G:185-213
H:185-213
29
29
29
29
29
29
29
29
1.9a
ENST00000300283
9a
ENSE00001698200
chr15:
43888606-43888729
124
KCRU_HUMAN
251-292
42
8
A:213-254
B:213-254
C:213-254
D:213-254
E:213-254
F:213-254
G:213-254
H:213-254
42
42
42
42
42
42
42
42
1.10c
ENST00000300283
10c
ENSE00001696702
chr15:
43890391-43890525
135
KCRU_HUMAN
293-337
45
8
A:255-299
B:255-299
C:255-299
D:255-299
E:255-299
F:255-299
G:255-299
H:255-299
45
45
45
45
45
45
45
45
1.11
ENST00000300283
11
ENSE00001735055
chr15:
43891025-43891150
126
KCRU_HUMAN
338-379
42
8
A:300-341
B:300-341
C:300-341
D:300-341
E:300-341
F:300-341
G:300-341
H:300-341
42
42
42
42
42
42
42
42
1.12a
ENST00000300283
12a
ENSE00001669537
chr15:
43891355-43891471
117
KCRU_HUMAN
380-417
38
8
A:342-379
B:342-379
C:342-379
D:342-379
E:342-379
F:342-379
G:342-379
H:342-379
38
38
38
38
38
38
38
38
[
close EXON info
]
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1qk1a1 (A:1-102)
1b: SCOP_d1qk1b1 (B:1-102)
1c: SCOP_d1qk1c1 (C:1-102)
1d: SCOP_d1qk1d1 (D:1-102)
1e: SCOP_d1qk1e1 (E:1-102)
1f: SCOP_d1qk1f1 (F:1-102)
1g: SCOP_d1qk1g1 (G:1-102)
1h: SCOP_d1qk1h1 (H:1-102)
2a: SCOP_d1qk1a2 (A:103-379)
2b: SCOP_d1qk1b2 (B:103-379)
2c: SCOP_d1qk1c2 (C:103-379)
2d: SCOP_d1qk1d2 (D:103-379)
2e: SCOP_d1qk1e2 (E:103-379)
2f: SCOP_d1qk1f2 (F:103-379)
2g: SCOP_d1qk1g2 (G:103-379)
2h: SCOP_d1qk1h2 (H:103-379)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Guanido kinase N-terminal domain
(35)
Superfamily
:
Guanido kinase N-terminal domain
(35)
Family
:
Guanido kinase N-terminal domain
(21)
Protein domain
:
Creatine kinase, N-domain
(8)
Human (Homo sapiens), mitochondria [TaxId: 9606]
(1)
1a
d1qk1a1
A:1-102
1b
d1qk1b1
B:1-102
1c
d1qk1c1
C:1-102
1d
d1qk1d1
D:1-102
1e
d1qk1e1
E:1-102
1f
d1qk1f1
F:1-102
1g
d1qk1g1
G:1-102
1h
d1qk1h1
H:1-102
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Guanido kinase catalytic domain
(29)
Protein domain
:
Creatine kinase, C-terminal domain
(8)
Human (Homo sapiens), mitochondria [TaxId: 9606]
(1)
2a
d1qk1a2
A:103-379
2b
d1qk1b2
B:103-379
2c
d1qk1c2
C:103-379
2d
d1qk1d2
D:103-379
2e
d1qk1e2
E:103-379
2f
d1qk1f2
F:103-379
2g
d1qk1g2
G:103-379
2h
d1qk1h2
H:103-379
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1qk1A02 (A:101-379)
1b: CATH_1qk1B02 (B:101-379)
1c: CATH_1qk1D02 (D:101-379)
1d: CATH_1qk1F02 (F:101-379)
1e: CATH_1qk1G02 (G:101-379)
1f: CATH_1qk1C02 (C:101-378)
1g: CATH_1qk1E02 (E:101-378)
1h: CATH_1qk1H02 (H:101-378)
2a: CATH_1qk1A01 (A:1-98)
2b: CATH_1qk1B01 (B:1-98)
2c: CATH_1qk1C01 (C:1-98)
2d: CATH_1qk1D01 (D:1-98)
2e: CATH_1qk1E01 (E:1-98)
2f: CATH_1qk1F01 (F:1-98)
2g: CATH_1qk1G01 (G:1-98)
2h: CATH_1qk1H01 (H:1-98)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Creatine Kinase; Chain A, domain 2
(27)
Homologous Superfamily
:
Creatine Kinase; Chain
(27)
Human (Homo sapiens)
(3)
1a
1qk1A02
A:101-379
1b
1qk1B02
B:101-379
1c
1qk1D02
D:101-379
1d
1qk1F02
F:101-379
1e
1qk1G02
G:101-379
1f
1qk1C02
C:101-378
1g
1qk1E02
E:101-378
1h
1qk1H02
H:101-378
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase Creatine Kinase; Chain A, domain 1
(26)
Homologous Superfamily
:
Transferase Creatine Kinase, Chain A, domain 1
(26)
Human (Homo sapiens)
(6)
2a
1qk1A01
A:1-98
2b
1qk1B01
B:1-98
2c
1qk1C01
C:1-98
2d
1qk1D01
D:1-98
2e
1qk1E01
E:1-98
2f
1qk1F01
F:1-98
2g
1qk1G01
G:1-98
2h
1qk1H01
H:1-98
[
close CATH info
]
Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_ATP_gua_Ptrans_1qk1H01 (H:115-362)
1b: PFAM_ATP_gua_Ptrans_1qk1H02 (H:115-362)
1c: PFAM_ATP_gua_Ptrans_1qk1H03 (H:115-362)
1d: PFAM_ATP_gua_Ptrans_1qk1H04 (H:115-362)
1e: PFAM_ATP_gua_Ptrans_1qk1H05 (H:115-362)
1f: PFAM_ATP_gua_Ptrans_1qk1H06 (H:115-362)
1g: PFAM_ATP_gua_Ptrans_1qk1H07 (H:115-362)
1h: PFAM_ATP_gua_Ptrans_1qk1H08 (H:115-362)
2a: PFAM_ATP_gua_PtransN_1qk1H09 (H:16-95)
2b: PFAM_ATP_gua_PtransN_1qk1H10 (H:16-95)
2c: PFAM_ATP_gua_PtransN_1qk1H11 (H:16-95)
2d: PFAM_ATP_gua_PtransN_1qk1H12 (H:16-95)
2e: PFAM_ATP_gua_PtransN_1qk1H13 (H:16-95)
2f: PFAM_ATP_gua_PtransN_1qk1H14 (H:16-95)
2g: PFAM_ATP_gua_PtransN_1qk1H15 (H:16-95)
2h: PFAM_ATP_gua_PtransN_1qk1H16 (H:16-95)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GCS
(23)
Family
:
ATP-gua_Ptrans
(14)
Homo sapiens (Human)
(1)
1a
ATP-gua_Ptrans-1qk1H01
H:115-362
1b
ATP-gua_Ptrans-1qk1H02
H:115-362
1c
ATP-gua_Ptrans-1qk1H03
H:115-362
1d
ATP-gua_Ptrans-1qk1H04
H:115-362
1e
ATP-gua_Ptrans-1qk1H05
H:115-362
1f
ATP-gua_Ptrans-1qk1H06
H:115-362
1g
ATP-gua_Ptrans-1qk1H07
H:115-362
1h
ATP-gua_Ptrans-1qk1H08
H:115-362
Clan
:
no clan defined [family: ATP-gua_PtransN]
(14)
Family
:
ATP-gua_PtransN
(14)
Homo sapiens (Human)
(1)
2a
ATP-gua_PtransN-1qk1H09
H:16-95
2b
ATP-gua_PtransN-1qk1H10
H:16-95
2c
ATP-gua_PtransN-1qk1H11
H:16-95
2d
ATP-gua_PtransN-1qk1H12
H:16-95
2e
ATP-gua_PtransN-1qk1H13
H:16-95
2f
ATP-gua_PtransN-1qk1H14
H:16-95
2g
ATP-gua_PtransN-1qk1H15
H:16-95
2h
ATP-gua_PtransN-1qk1H16
H:16-95
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (498 KB)
Header - Asym.Unit
Biol.Unit 1 (493 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1QK1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help