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1QJY
Asym. Unit
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Asym.Unit (148 KB)
Biol.Unit 1, α-C (7.8 MB)
Biol.Unit 1 (7.8 MB)
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(1)
Title
:
HUMAN RHINOVIRUS 16 COAT PROTEIN IN COMPLEX WITH ANTIVIRAL COMPOUND VP65099
Authors
:
A. T. Hadfield, G. D. Diana, M. G. Rossmann
Date
:
06 Jul 99 (Deposition) - 20 Jul 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1,2,3,4 (60x)
Keywords
:
Virus, Nucleotidyltransferase, Rhinovirus Coat Protein, Rna-Binding, Transferase, Lipoprotein, Win Compound, Phosphoprotein, Thiol Protease, Capsid Protein, Drug, Virion, Membrane, Helicase, Protease, Nucleotide-Binding, Human Rhinovirus 16, Rna Replication, Antiviral Compound, Covalent Protein-Rna Linkage, Myristate, Hydrolase, Cytoplasm, Atp-Binding, Cytoplasmic Vesicle, Host-Virus Interaction, Rna-Directed Rna Polymerase
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Reference
:
A. T. Hadfield, I. Minor, G. D. Diana, M. G. Rossmann
Analysis Of Three Structurally Related Antiviral Compounds In Complex With Human Rhinovirus 16
Proc. Natl. Acad. Sci. Usa V. 96 14730 1999
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: MYRISTIC ACID (MYRa)
2a: 2,6-DIMETHYL-1-(3-[3-METHYL-5-ISOX... (W03a)
3a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
MYR
1
Ligand/Ion
MYRISTIC ACID
2
W03
1
Ligand/Ion
2,6-DIMETHYL-1-(3-[3-METHYL-5-ISOXAZOLYL]-PROPANYL)-4-[2-METHYL-4-ISOXAZOLYL]-PHENOL
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS 1:134
BINDING SITE FOR RESIDUE ZN 16000
2
AC2
SOFTWARE
GLY 4:1 , ASN 4:30
BINDING SITE FOR RESIDUE MYR 44000
3
AC3
SOFTWARE
ILE 1:98 , TYR 1:142 , TYR 1:144 , VAL 1:168 , PHE 1:179 , LEU 1:181 , LEU 1:184 , MET 1:214 , LEU 1:217
BINDING SITE FOR RESIDUE W03 17003
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1qjy_1 (4:,2:)
1b: SCOP_d1qjy1_ (1:)
1c: SCOP_d1qjy3_ (3:)
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Rhinovirus coat proteins
(46)
Human rhinovirus 16, (HRV-16) [TaxId: 31708]
(9)
1a
d1qjy.1
4:,2:
1b
d1qjy1_
1:
1c
d1qjy3_
3:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1qjy400 (4:1-44)
2a: CATH_1qjy300 (3:1-238)
2b: CATH_1qjy200 (2:10-261)
2c: CATH_1qjy100 (1:1-285)
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(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
Rhinovirus 14, subunit 4
(68)
Hrv-16 (Human rhinovirus 16)
(3)
1a
1qjy400
4:1-44
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Hrv-16 (Human rhinovirus 16)
(3)
2a
1qjy300
3:1-238
2b
1qjy200
2:10-261
2c
1qjy100
1:1-285
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rhv_1qjy301 (3:28-197)
1b: PFAM_Rhv_1qjy302 (3:28-197)
1c: PFAM_Rhv_1qjy303 (3:28-197)
2a: PFAM_Pico_P1A_1qjy401 (4:1-44)
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Clan
:
Viral_ssRNA_CP
(106)
Family
:
Rhv
(55)
Human rhinovirus 16 (HRV-16)
(6)
1a
Rhv-1qjy301
3:28-197
1b
Rhv-1qjy302
3:28-197
1c
Rhv-1qjy303
3:28-197
Clan
:
no clan defined [family: Pico_P1A]
(41)
Family
:
Pico_P1A
(41)
Human rhinovirus 16 (HRV-16)
(6)
2a
Pico_P1A-1qjy401
4:1-44
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Asymmetric Unit 1
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Asym.Unit (148 KB)
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Biol.Unit 1 (7.8 MB)
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