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1QJS
Biol. Unit 1
Info
Asym.Unit (145 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (71 KB)
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(1)
Title
:
MAMMALIAN BLOOD SERUM HAEMOPEXIN GLYCOSYLATED-NATIVE PROTEIN AND IN COMPLEX WITH ITS LIGAND HAEM
Authors
:
M. Paoli, H. M. Baker, W. T. Morgan, A. Smith, E. N. Baker
Date
:
01 Jul 99 (Deposition) - 03 Feb 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transport Protein, Haem Binding Protein, Beta Propeller, Haem Binding And Transport, Iron Metabolism
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Paoli, B. F. Anderson, H. M. Baker, W. T. Morgan, A. Smith, E. N. Baker
Crystal Structure Of Hemopexin Reveals A Novel High-Affinity Heme Site Formed Between Two Beta- Propeller Domains.
Nat. Struct. Biol. V. 6 926 1999
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
NA
-1
Ligand/Ion
SODIUM ION
4
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:284 , PHE A:285 , ALA A:336 , PHE A:337 , VAL A:338 , ALA A:379 , LEU A:380 , CYS A:381 , NA A:522
BINDING SITE FOR RESIDUE PO4 A 501
2
AC2
SOFTWARE
THR A:36 , ALA A:77 , ALA A:123 , SER A:167 , ALA A:168 , NA A:513
BINDING SITE FOR RESIDUE CL A 511
3
AC3
SOFTWARE
ASP A:34 , ASP A:75 , ASP A:121 , THR A:166
BINDING SITE FOR RESIDUE NA A 512
4
AC4
SOFTWARE
THR A:36 , ALA A:77 , ALA A:123 , ALA A:168 , CL A:511
BINDING SITE FOR RESIDUE NA A 513
5
AC5
SOFTWARE
ALA A:284 , ALA A:335 , ALA A:336 , ALA A:379 , NA A:522
BINDING SITE FOR RESIDUE CL A 521
6
AC6
SOFTWARE
MET A:239 , ALA A:284 , ALA A:336 , ALA A:379 , PO4 A:501 , CL A:521
BINDING SITE FOR RESIDUE NA A 522
7
AC7
SOFTWARE
SER A:237 , ASP A:282 , ASP A:334 , ASP A:377
BINDING SITE FOR RESIDUE NA A 523
8
BC6
SOFTWARE
HIS A:56 , TRP A:171 , ARG A:174 , TYR A:176 , ARG A:185 , TYR A:197 , PHE A:205 , HIS A:213 , HIS A:225 , SER A:227 , HIS A:266 , PRO A:269 , HIS A:272
BINDING SITE FOR RESIDUE HEM A 500
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 9)
Info
All PROSITE Patterns/Profiles
1: HEMOPEXIN_2 (A:30-70,A:71-116,A:162-208,A:117-1...)
2: HEMOPEXIN (A:270-285)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEMOPEXIN_2
PS51642
Hemopexin repeat profile.
HEMO_RABIT
55-95
96-141
187-233
142-186
257-302
303-350
355-394
398-448
8
A:30-70
-
A:71-116
-
A:162-208
-
A:117-161
-
A:232-277
-
A:278-325
-
A:330-369
-
A:373-423
-
2
HEMOPEXIN
PS00024
Hemopexin domain signature.
HEMO_RABIT
295-310
1
A:270-285
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1qjsa1 (A:24-218)
1b: SCOP_d1qjsa2 (A:223-435)
1c: SCOP_d1qjsb1 (B:24-218)
1d: SCOP_d1qjsb2 (B:223-435)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
4-bladed beta-propeller
(15)
Superfamily
:
Hemopexin-like domain
(15)
Family
:
Hemopexin-like domain
(12)
Protein domain
:
Hemopexin
(3)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(3)
1a
d1qjsa1
A:24-218
1b
d1qjsa2
A:223-435
1c
d1qjsb1
B:24-218
1d
d1qjsb2
B:223-435
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1qjsA02 (A:216-433)
1b: CATH_1qjsB02 (B:216-433)
1c: CATH_1qjsA01 (A:24-213)
1d: CATH_1qjsB01 (B:24-213)
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Class
:
Mainly Beta
(13760)
Architecture
:
4 Propellor
(14)
Topology
:
Hemopexin
(14)
Homologous Superfamily
:
Hemopexin
(14)
Rabbit (Oryctolagus cuniculus)
(3)
1a
1qjsA02
A:216-433
1b
1qjsB02
B:216-433
1c
1qjsA01
A:24-213
1d
1qjsB01
B:24-213
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (145 KB)
Header - Asym.Unit
Biol.Unit 1 (70 KB)
Header - Biol.Unit 1
Biol.Unit 2 (71 KB)
Header - Biol.Unit 2
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