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1QJS
Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (71 KB)
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(1)
Title
:
MAMMALIAN BLOOD SERUM HAEMOPEXIN GLYCOSYLATED-NATIVE PROTEIN AND IN COMPLEX WITH ITS LIGAND HAEM
Authors
:
M. Paoli, H. M. Baker, W. T. Morgan, A. Smith, E. N. Baker
Date
:
01 Jul 99 (Deposition) - 03 Feb 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transport Protein, Haem Binding Protein, Beta Propeller, Haem Binding And Transport, Iron Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Paoli, B. F. Anderson, H. M. Baker, W. T. Morgan, A. Smith, E. N. Baker
Crystal Structure Of Hemopexin Reveals A Novel High-Affinity Heme Site Formed Between Two Beta- Propeller Domains.
Nat. Struct. Biol. V. 6 926 1999
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
NA
8
Ligand/Ion
SODIUM ION
4
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:284 , PHE A:285 , ALA A:336 , PHE A:337 , VAL A:338 , ALA A:379 , LEU A:380 , CYS A:381 , NA A:522
BINDING SITE FOR RESIDUE PO4 A 501
02
AC2
SOFTWARE
THR A:36 , ALA A:77 , ALA A:123 , SER A:167 , ALA A:168 , NA A:513
BINDING SITE FOR RESIDUE CL A 511
03
AC3
SOFTWARE
ASP A:34 , ASP A:75 , ASP A:121 , THR A:166
BINDING SITE FOR RESIDUE NA A 512
04
AC4
SOFTWARE
THR A:36 , ALA A:77 , ALA A:123 , ALA A:168 , CL A:511
BINDING SITE FOR RESIDUE NA A 513
05
AC5
SOFTWARE
ALA A:284 , ALA A:335 , ALA A:336 , ALA A:379 , NA A:522
BINDING SITE FOR RESIDUE CL A 521
06
AC6
SOFTWARE
MET A:239 , ALA A:284 , ALA A:336 , ALA A:379 , PO4 A:501 , CL A:521
BINDING SITE FOR RESIDUE NA A 522
07
AC7
SOFTWARE
SER A:237 , ASP A:282 , ASP A:334 , ASP A:377
BINDING SITE FOR RESIDUE NA A 523
08
AC8
SOFTWARE
ALA B:284 , PHE B:285 , ALA B:336 , PHE B:337 , VAL B:338 , ALA B:379 , LEU B:380 , CYS B:381 , NA B:522
BINDING SITE FOR RESIDUE PO4 B 501
09
AC9
SOFTWARE
ALA B:35 , THR B:36 , ALA B:77 , SER B:167 , ALA B:168 , NA B:513
BINDING SITE FOR RESIDUE CL B 511
10
BC1
SOFTWARE
ASP B:34 , ASP B:75 , ASP B:121 , THR B:166
BINDING SITE FOR RESIDUE NA B 512
11
BC2
SOFTWARE
THR B:36 , ALA B:77 , ALA B:123 , ALA B:168 , CL B:511
BINDING SITE FOR RESIDUE NA B 513
12
BC3
SOFTWARE
ALA B:284 , ALA B:335 , ALA B:336 , ALA B:379 , NA B:522
BINDING SITE FOR RESIDUE CL B 521
13
BC4
SOFTWARE
MET B:239 , ALA B:284 , ALA B:336 , ALA B:379 , PO4 B:501 , CL B:521
BINDING SITE FOR RESIDUE NA B 522
14
BC5
SOFTWARE
SER B:237 , ASP B:282 , ASP B:334 , ASP B:377
BINDING SITE FOR RESIDUE NA B 523
15
BC6
SOFTWARE
HIS A:56 , TRP A:171 , ARG A:174 , TYR A:176 , ARG A:185 , TYR A:197 , PHE A:205 , HIS A:213 , HIS A:225 , SER A:227 , HIS A:266 , PRO A:269 , HIS A:272
BINDING SITE FOR RESIDUE HEM A 500
16
BC7
SOFTWARE
HIS B:56 , TYR B:176 , PHE B:183 , TYR B:197 , LEU B:199 , TYR B:204 , PHE B:205 , HIS B:213 , ARG B:214 , HIS B:266
BINDING SITE FOR RESIDUE HEM B 500
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 18)
Info
All PROSITE Patterns/Profiles
1: HEMOPEXIN_2 (A:30-70,B:30-70|A:71-116,B:71-116|...)
2: HEMOPEXIN (A:270-285,B:270-285)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEMOPEXIN_2
PS51642
Hemopexin repeat profile.
HEMO_RABIT
55-95
96-141
187-233
142-186
257-302
303-350
355-394
398-448
16
A:30-70
B:30-70
A:71-116
B:71-116
A:162-208
B:162-208
A:117-161
B:117-161
A:232-277
B:232-277
A:278-325
B:278-325
A:330-369
B:330-369
A:373-423
B:373-423
2
HEMOPEXIN
PS00024
Hemopexin domain signature.
HEMO_RABIT
295-310
2
A:270-285
B:270-285
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1qjsa1 (A:24-218)
1b: SCOP_d1qjsa2 (A:223-435)
1c: SCOP_d1qjsb1 (B:24-218)
1d: SCOP_d1qjsb2 (B:223-435)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
4-bladed beta-propeller
(15)
Superfamily
:
Hemopexin-like domain
(15)
Family
:
Hemopexin-like domain
(12)
Protein domain
:
Hemopexin
(3)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(3)
1a
d1qjsa1
A:24-218
1b
d1qjsa2
A:223-435
1c
d1qjsb1
B:24-218
1d
d1qjsb2
B:223-435
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1qjsA02 (A:216-433)
1b: CATH_1qjsB02 (B:216-433)
1c: CATH_1qjsA01 (A:24-213)
1d: CATH_1qjsB01 (B:24-213)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
4 Propellor
(14)
Topology
:
Hemopexin
(14)
Homologous Superfamily
:
Hemopexin
(14)
Rabbit (Oryctolagus cuniculus)
(3)
1a
1qjsA02
A:216-433
1b
1qjsB02
B:216-433
1c
1qjsA01
A:24-213
1d
1qjsB01
B:24-213
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (145 KB)
Header - Asym.Unit
Biol.Unit 1 (70 KB)
Header - Biol.Unit 1
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