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1QIC
Biol. Unit 1
Info
Asym.Unit (111 KB)
Biol.Unit 1 (29 KB)
Biol.Unit 2 (29 KB)
Biol.Unit 3 (29 KB)
Biol.Unit 4 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF STROMELYSIN CATALYTIC DOMAIN
Authors
:
M. G. Williams, Q. -Z. Ye, F. Molina, L. L. Johnson, D. F. Ortwine, A. G. Pavlovsky, J. R. Rubin, R. W. Skeean, A. D. White, T. L. Blundell, C. Humblet, D. J. Hupe, V. Dhanaraj
Date
:
11 Jun 99 (Deposition) - 11 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Inhibitor, Matrixin, Matrix Metalloproteinase-3 (Mmp-3), Stromelysin-1, Metzincin, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. G. Pavlovsky, M. G. Williams, Q. -Z. Ye, D. F. Ortwine, C. F. Purchase 2Nd, A. D. White, V. Dhanaraj, B. D. Roth, L. L. Johnson, D. J. Hupe, C. Humblet, T. L. Blundell
X-Ray Structure Of Human Stromelysin Catalytic Domain Complexed With Nonpeptide Inhibitors: Implications For Inhibitor Selectivity
Protein Sci. V. 8 1455 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:201 , HIS A:205 , HIS A:211
BINDING SITE FOR RESIDUE ZN A 501
2
AC2
SOFTWARE
HIS A:151 , ASP A:153 , HIS A:166 , HIS A:179
BINDING SITE FOR RESIDUE ZN A 502
3
AC9
SOFTWARE
ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184
BINDING SITE FOR RESIDUE CA A 503
4
BC1
SOFTWARE
ALA A:140 , ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177 , HOH A:301
BINDING SITE FOR RESIDUE CA A 504
5
BC2
SOFTWARE
ASP A:107 , ASP A:182 , GLU A:184 , HOH A:302
BINDING SITE FOR RESIDUE CA A 505
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:198-207)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP3_HUMAN
215-224
1
A:198-207
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1qica_ (A:)
1b: SCOP_d1qicb_ (B:)
1c: SCOP_d1qicc_ (C:)
1d: SCOP_d1qicd_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Stromelysin-1 (MMP-3)
(40)
Human (Homo sapiens), fibroblast [TaxId: 9606]
(40)
1a
d1qica_
A:
1b
d1qicb_
B:
1c
d1qicc_
C:
1d
d1qicd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1qicA00 (A:89-249)
1b: CATH_1qicB00 (B:89-249)
1c: CATH_1qicC00 (C:89-249)
1d: CATH_1qicD00 (D:89-249)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1qicA00
A:89-249
1b
1qicB00
B:89-249
1c
1qicC00
C:89-249
1d
1qicD00
D:89-249
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_M10_1qicD01 (D:91-247)
1b: PFAM_Peptidase_M10_1qicD02 (D:91-247)
1c: PFAM_Peptidase_M10_1qicD03 (D:91-247)
1d: PFAM_Peptidase_M10_1qicD04 (D:91-247)
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Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
1a
Peptidase_M10-1qicD01
D:91-247
1b
Peptidase_M10-1qicD02
D:91-247
1c
Peptidase_M10-1qicD03
D:91-247
1d
Peptidase_M10-1qicD04
D:91-247
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (29 KB)
Header - Biol.Unit 1
Biol.Unit 2 (29 KB)
Header - Biol.Unit 2
Biol.Unit 3 (29 KB)
Header - Biol.Unit 3
Biol.Unit 4 (29 KB)
Header - Biol.Unit 4
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