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1QI1
Asym. Unit
Info
Asym.Unit (297 KB)
Biol.Unit 1 (291 KB)
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(1)
Title
:
TERNARY COMPLEX OF AN NADP DEPENDENT ALDEHYDE DEHYDROGENASE
Authors
:
D. Cobessi, F. Tete-Favier, S. Marchal, G. Branlant, A. Aubry
Date
:
02 Jun 99 (Deposition) - 10 Jan 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Cobessi, F. Tete-Favier, S. Marchal, G. Branlant, A. Aubry
Structural And Biochemical Investigations Of The Catalytic Mechanism Of An Nadp-Dependent Aldehyde Dehydrogenase From Streptococcus Mutans.
J. Mol. Biol. V. 300 141 2000
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: GLYCERALDEHYDE-3-PHOSPHATE (G3Ha)
1b: GLYCERALDEHYDE-3-PHOSPHATE (G3Hb)
1c: GLYCERALDEHYDE-3-PHOSPHATE (G3Hc)
2a: SN-GLYCEROL-3-PHOSPHATE (G3Pa)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
3c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
3d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
G3H
3
Ligand/Ion
GLYCERALDEHYDE-3-PHOSPHATE
2
G3P
1
Ligand/Ion
SN-GLYCEROL-3-PHOSPHATE
3
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:150 , SER A:151 , PRO A:152 , PHE A:153 , ASN A:154 , LEU A:159 , LYS A:177 , PRO A:179 , THR A:180 , GLY A:210 , GLY A:214 , ASP A:215 , PHE A:228 , THR A:229 , GLY A:230 , SER A:231 , ILE A:234 , GLU A:250 , LEU A:251 , SER A:284 , PHE A:379 , G3H A:504
BINDING SITE FOR RESIDUE NAP A 500
2
AC2
SOFTWARE
ILE B:150 , SER B:151 , PRO B:152 , PHE B:153 , ASN B:154 , TYR B:155 , LEU B:159 , LYS B:177 , PRO B:179 , THR B:180 , GLY B:208 , GLY B:210 , GLY B:214 , ASP B:215 , PHE B:228 , GLY B:230 , SER B:231 , ILE B:234 , GLU B:250 , LEU B:251 , SER B:284 , G3P B:505
BINDING SITE FOR RESIDUE NAP B 501
3
AC3
SOFTWARE
ILE C:150 , SER C:151 , PHE C:153 , ASN C:154 , TYR C:155 , LEU C:159 , LYS C:177 , PRO C:178 , PRO C:179 , THR C:180 , GLY C:210 , GLY C:214 , ASP C:215 , PHE C:228 , THR C:229 , GLY C:230 , SER C:231 , ILE C:234 , GLU C:250 , LEU C:251 , SER C:284 , GLU C:377 , PHE C:379 , G3H C:506
BINDING SITE FOR RESIDUE NAP C 502
4
AC4
SOFTWARE
ILE D:150 , SER D:151 , PRO D:152 , PHE D:153 , ASN D:154 , LEU D:159 , LYS D:177 , PRO D:179 , THR D:180 , GLY D:214 , ASP D:215 , VAL D:218 , PHE D:228 , GLY D:230 , SER D:231 , ILE D:234 , GLU D:250 , LEU D:251 , GLY D:252 , SER D:284 , GLU D:377 , PHE D:379 , G3H D:507
BINDING SITE FOR RESIDUE NAP D 503
5
AC5
SOFTWARE
ARG A:103 , ASN A:154 , TYR A:155 , ARG A:283 , SER A:284 , THR A:285 , GLN A:436 , ARG A:437 , NAP A:500
BINDING SITE FOR RESIDUE G3H A 504
6
AC6
SOFTWARE
ARG B:103 , TYR B:155 , GLU B:250 , ARG B:283 , SER B:284 , THR B:285 , GLN B:436 , ARG B:437 , NAP B:501
BINDING SITE FOR RESIDUE G3P B 505
7
AC7
SOFTWARE
ARG C:103 , ASN C:154 , TYR C:155 , ARG C:283 , SER C:284 , THR C:285 , GLN C:436 , ARG C:437 , NAP C:502
BINDING SITE FOR RESIDUE G3H C 506
8
AC8
SOFTWARE
ARG D:103 , TYR D:155 , ARG D:283 , SER D:284 , THR D:285 , GLN D:436 , ARG D:437 , NAP D:503
BINDING SITE FOR RESIDUE G3H D 507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_CYS (A:277-288,B:277-288,C:277-288,D:27...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
GAPN_STRMU
277-288
4
A:277-288
B:277-288
C:277-288
D:277-288
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1qi1a_ (A:)
1b: SCOP_d1qi1b_ (B:)
1c: SCOP_d1qi1c_ (C:)
1d: SCOP_d1qi1d_ (D:)
View:
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(
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(
)
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)
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Streptococcus mutans [TaxId: 1309]
(4)
1a
d1qi1a_
A:
1b
d1qi1b_
B:
1c
d1qi1c_
C:
1d
d1qi1d_
D:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1qi1A01 (A:2-251,A:451-474)
1b: CATH_1qi1B01 (B:2-251,B:451-474)
1c: CATH_1qi1C01 (C:2-251,C:451-474)
1d: CATH_1qi1D01 (D:2-251,D:451-474)
2a: CATH_1qi1A02 (A:254-446)
2b: CATH_1qi1B02 (B:254-446)
2c: CATH_1qi1C02 (C:254-446)
2d: CATH_1qi1D02 (D:254-446)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Streptococcus mutans. Organism_taxid: 1309.
(5)
1a
1qi1A01
A:2-251,A:451-474
1b
1qi1B01
B:2-251,B:451-474
1c
1qi1C01
C:2-251,C:451-474
1d
1qi1D01
D:2-251,D:451-474
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Streptococcus mutans. Organism_taxid: 1309.
(5)
2a
1qi1A02
A:254-446
2b
1qi1B02
B:254-446
2c
1qi1C02
C:254-446
2d
1qi1D02
D:254-446
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set label size to 20 (allowed range: 1-58)
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Asym.Unit (297 KB)
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